
NORMA normal mode fiting of crystal structures into EM densities using URO and NMA
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Karsten Suhre <mailto:karsten.suhre@igs.cnrs-mrs.fr> , Wed Oct 20 2005


This directory contains :

* The CaATPase EM density map in NEWEZD format 

  dtg8.ezd

  REF: Hinsen K, Reuter N, Navaza J, Stokes DL, Lacapere JJ.,
       Normal mode-based fitting of atomic structure into electron density maps:
       application to sarcoplasmic reticulum Ca-ATPase.,
       Biophys J. 2005; 88:818-827.

  NOTE: This dataset has been kindly made available for use within the educational context
        of NORMA only. This dataset is NOT in the public domain.
        For further copyright details, please contact :

          Jean-Jacques LACAPERE <Jean-Jacques.Lacapere@bichat.inserm.fr>
          INSERM U.683
          Faculte de Medecine Xavier Bichat
          16 rue Henri Huchard, BP 416
          75870 PARIS  18
          Tel. (33) 01 44 85 61 36
          Fax (33) 01 42 28 87 65


* The initial model, open conformation, prepositioned into the EM map:

  1eul.moved.pdb

  REF: Toyoshima, C., Nakasako, M., Nomura, H., Ogawa, H.,
       Crystal Structure of the Calcium Pump of Sarcoplasmic Reticulum at 2.6 A Resolution.
       Nature 405 pp. 647 (2000)


* The symmetry file for URO in two formats and the viewing position for O (see URO documentation)

  sym
  gs.real
  gs.sym
  symlist
  mv symlist sym gs.sym gs.real dtg8.ezd 1eul.moved.pdb ./d




see also :
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http://www.igs.cnrs-mrs.fr/elnemo/NORMA/

