*** ***
output from eigenvector calculation:
STDOUT:
Build Tirion matrix:
Pdbmat> Computes the Hessian matrix, using an Elastic Network Model.
Pdbmat> Version 3.50, Fevrier 2004.
Pdbmat> Options to be read in pdbmat.dat file.
Pdbmat> Coordinate filename = 240415005805254616.atom
Pdbmat> Distance cutoff = 8.00
Force constant = 10.00
Origin of mass values = CONS
Pdbmat> Levelshift = 1.0E-09
PRINTing level = 2
Pdbmat> Coordinate file 240415005805254616.atom to be opened.
Openam> File opened: 240415005805254616.atom
Pdbmat> Coordinate file in PDB format.
Rdatompdb> Reading pdb file.
Rdatompdb> End of file reached.
Rdatompdb> Number of I/O errors: 0
Rdatompdb> Number of residues found = 186
First residue number = 96
Last residue number = 1291
Number of atoms found = 186
Mean number per residue = 1.0
Pdbmat> Coordinate statistics:
= 103.306774 +/- 9.474875 From: 82.510000 To: 123.336000
= -69.137903 +/- 8.265820 From: -89.126000 To: -49.877000
= -263.938500 +/- 9.494202 From: -283.950000 To: -243.076000
Pdbmat> Masses are all set to one.
%Pdbmat-W> residue:'ZN ' is not a well known amino-acid.
%Pdbmat-W> 1 residue(s) not known.
Openam> File opened: pdbmat.xyzm
Pdbmat> Coordinates and masses considered are saved.
Openam> File opened: pdbmat.sdijf
Pdbmat> Matrix statistics:
Pdbmat> The matrix is 5.9034 % Filled.
Pdbmat> 9207 non-zero elements.
Pdbmat> 899 atom-atom interactions.
Pdbmat> Number per atom= 9.67 +/- 3.17
Maximum number = 18
Minimum number = 3
Pdbmat> Matrix trace = 17980.0
Pdbmat> Larger element = 68.8809
Pdbmat> 0 elements larger than +/- 1.0E+10
Pdbmat> Normal end.
using diagstd (there are 186 atoms in your structure)
Diagstd> Version 1.05, August 2004.
Diagstd> Matrix to be read from file: pdbmat.sdijf
Diagstd> Lecture de la matrice -Format CERFACS-
Diagstd> Matrix dimension (Nord) = 558
Diagstd> Number of non-zero elements 9207
Diagstd> Nb of elements found twice: 0
Diagstd> Nb of elements > 1E+10 : 0
Diagstd> Matrix trace: 17980.0000006
%Diagstd-Wn: Nb on non-zero elements there: 558
Openam> file on opening on unit 11:
pdbmat.eigenfacs
Diagstd> Diagonalization.
Diagstd> 558 eigenvectors are about to be computed.
Diagstd> Sum of eigenvalues = 17980.0000006
Diagstd> Eigenvalues:
0.0000000 0.0000000 0.0000000 0.0000000 0.0000000
0.0000000 0.0024631 0.0565925 0.0717568 0.1035351
0.1155615 0.1290461 0.1587833 0.1748323 0.2014347
0.2241673 0.2439636 0.2826104 0.2926535 0.3754130
0.4093191 0.4308667 0.4990159 0.5046567 0.5909818
0.6145835 0.6662760 0.7072258 0.7995192 0.8605077
0.9075889 0.9597175 0.9613449 1.0012879 1.0357430
1.0885028 1.1805724 1.2395387 1.3433682 1.3777160
1.4166896 1.4563418 1.5505348 1.6249286 1.7273661
1.8272230 1.8881146 1.9220846 1.9689447 2.0728343
2.1481333 2.2491826 2.3657296 2.4012485 2.5435496
2.5799841 2.6232750 2.6696771 2.7622739 2.8328464
2.8496339 2.9786453 3.1780025 3.2796163 3.3517897
3.4350377 3.5949253 3.6306433 3.7432764 3.8459539
3.9067071 4.0202268 4.1113375 4.1798521 4.2136860
4.2603409 4.3037605 4.4262228 4.5134525 4.6224504
4.7103444 4.7823087 4.8513717 4.9332537 5.0843521
5.1040756 5.3629035 5.4027657 5.4677596 5.5386777
5.5973650 5.6663061 5.7306869 5.8142839 5.9231356
6.0839622 6.1322497 6.2858322 6.3757065 6.4858199
6.5168760 6.6528502 6.7697131 6.9124673 6.9340121
6.9709496 7.0722600 7.1770584 7.3810029 7.4125445
7.5177493 7.5518367 7.7566756 7.7678255 7.8578054
7.9391848 8.1586691 8.2255171 8.4275110 8.4948521
8.5454828 8.6260309 8.6951162 8.8708971 8.9577082
9.0722157 9.1855762 9.2662754 9.4205618 9.4309198
9.5549009 9.7149413 9.8340632 9.8638598 9.9941876
10.2309377 10.2590007 10.4165107 10.5689134 10.7523283
10.7846844 10.9426549 11.0482809 11.0638125 11.1834641
11.2970470 11.3725548 11.4935636 11.6683000 11.7621989
11.9232520 11.9781419 12.0389315 12.1084987 12.2702408
12.4029743 12.6309988 12.7756849 12.8204385 12.9998468
13.0791262 13.2036346 13.3281821 13.3923885 13.5122964
13.6757565 13.6871808 13.7400421 13.8619264 13.9805548
14.1169517 14.2177645 14.3896123 14.6382617 14.7332095
14.8658604 15.0426792 15.1243153 15.2230539 15.3245555
15.3914819 15.4872621 15.6207984 15.7836944 15.8945750
15.9045512 16.1068275 16.2151088 16.5013439 16.6924955
16.7027161 16.7835942 16.9515274 17.0368630 17.1242688
17.2237245 17.2689949 17.3701639 17.5194378 17.5417511
17.6716206 17.8034529 17.9926713 18.0469689 18.2975730
18.4129925 18.4862100 18.7407563 18.8283310 18.8981613
19.1426016 19.2396952 19.4001019 19.4368743 19.5941873
19.6851997 19.7431011 19.8583398 19.9765048 20.1698023
20.3940029 20.4988627 20.5531221 20.5921791 20.7425105
20.8051210 20.9770614 21.1902664 21.2951689 21.3951954
21.5635121 21.7790258 21.8876543 21.9121111 21.9665732
22.2178495 22.2671084 22.3782842 22.5654457 22.7326652
22.7746164 22.8984965 23.0024029 23.2039102 23.2611465
23.3425452 23.4700448 23.6573060 23.7362232 23.8094040
23.8888256 24.0153523 24.1172823 24.2086687 24.3671386
24.3981639 24.5174932 24.6243868 24.6724803 24.8392138
24.9392617 24.9822104 25.1077557 25.2822751 25.3248239
25.4330992 25.4905403 25.5738064 25.7818170 25.8340656
26.0019442 26.0593691 26.1344459 26.1846706 26.2609175
26.3268429 26.5764391 26.6629132 26.7334757 26.8844382
26.9750939 27.1267018 27.2270871 27.3996101 27.5954385
27.6218817 27.8238980 27.9896419 28.1529646 28.1980017
28.4015318 28.5181913 28.6820373 28.8180464 28.9671646
29.0906652 29.1206664 29.2016157 29.3484806 29.4162337
29.4531710 29.6136750 29.7895152 29.9069809 30.0198834
30.1355197 30.2208757 30.5676806 30.6187145 30.8299562
30.9864455 31.1667590 31.3148335 31.5171421 31.8087673
31.8761735 32.1971098 32.2936401 32.4009463 32.5290596
32.7839491 32.8629168 33.2313924 33.3984218 33.5300425
33.5850536 33.8865250 34.0189210 34.0462242 34.3355176
34.6323699 34.6617024 34.7764088 34.8627650 35.0662978
35.3679970 35.4315345 35.5081860 35.6285748 35.7117294
35.9375872 36.0005581 36.1430172 36.2753202 36.3775601
36.5377459 36.7082475 36.8674163 37.0872416 37.1021500
37.2388394 37.4704812 37.7543734 37.8986357 37.9945239
38.2338012 38.4363925 38.7680775 38.8666175 38.9290655
39.0926447 39.2520935 39.3980231 39.4677516 39.6059091
39.7525063 39.9450312 40.1144223 40.1790844 40.2968577
40.6149083 40.6457494 40.8181243 41.0525836 41.1549136
41.4622057 41.6283535 41.8765356 42.0442139 42.1007529
42.2221612 42.4264838 42.5522821 42.6606312 42.9956879
43.1297667 43.1811323 43.4149658 43.6673009 43.7957010
44.3525384 44.6355935 44.7623051 44.9277930 45.1222342
45.2364896 45.6013994 45.7235662 45.8110378 46.0489999
46.1159828 46.2973943 46.4138621 46.6709132 46.7037713
46.8812247 47.0872022 47.2027549 47.3323484 47.5606670
48.0973299 48.1178524 48.2890247 48.4495577 48.5716745
48.8358421 48.9907254 49.1773649 49.2718364 49.5791792
49.6450821 49.8177086 49.9166067 50.2450977 50.7305609
50.8270052 50.9395679 51.1422198 51.3474131 51.5018613
51.6033050 51.8896309 52.0580829 52.1746479 52.2910078
52.4884294 52.8888903 53.0449883 53.3019125 53.4552987
53.7442843 53.8681253 54.1522761 54.3638781 54.5404166
54.8000574 55.0497196 55.1454339 55.3056151 55.5703662
55.7840814 55.9134462 56.0121906 56.2840138 56.6113115
56.7765463 56.8566790 57.3397423 57.4745855 57.5782938
58.0552592 58.4296887 58.5330335 58.5871977 59.3141067
59.4778012 59.8393655 59.9946503 60.2640622 60.5084119
60.8610746 61.2693578 61.4396034 61.7300199 61.8401030
62.1571984 62.3481762 62.4734132 62.8527469 63.1776728
63.3550284 63.5806708 63.6245287 63.9256843 64.1792442
64.5593248 64.8059018 64.9997621 65.3070814 65.4801743
65.6242731 66.0259091 66.4193418 66.6541092 67.0205549
67.2138471 67.5236534 67.8337793 68.2394983 68.3897612
68.6117822 68.7563191 69.5513472 69.8308454 70.1067762
70.8677956 70.9682019 71.2811175 71.7039152 72.0268279
72.3733119 73.2547138 73.5714253 74.1049894 74.4425528
74.7175425 74.9902788 75.2910577 75.7564477 76.7050087
77.7025488 78.0418027 78.4970201 79.1218684 79.4898028
80.0733353 80.4851696 81.0019620 81.2574551 81.3456651
82.0465000 82.5351927 83.0494099 83.4647970 84.8059512
85.4069587 85.7668010 86.3673399 86.8409268 87.1659777
88.4969412 88.9160530 89.1224145 89.7429257 90.8949842
91.3731793 91.9014590 92.4922247 93.1619645 93.8262254
94.5490830 95.6195267 96.2876080 97.3617695 100.2337875
101.6034911 102.6541294 103.5730157
Diagstd> Frequencies (cm-1, if the matrix is a hessien in CHARMM units):
0.0034255 0.0034310 0.0034346 0.0034366 0.0034395
0.0034437 5.3893531 25.8329943 29.0888719 34.9412977
36.9149093 39.0092676 43.2710770 45.4052531 48.7374021
51.4140073 53.6361693 57.7283727 58.7451666 66.5349677
69.4746409 71.2798484 76.7100880 77.1424249 83.4799790
85.1306053 88.6384934 91.3217709 97.0978749 100.7332041
103.4522332 106.3817127 106.4718704 108.6612682 110.5150158
113.2948219 117.9890197 120.8997273 125.8614713 127.4603591
129.2506197 131.0469582 135.2184753 138.4243282 142.7208665
146.7881689 149.2139616 150.5502659 152.3744120 156.3426868
159.1570546 162.8574529 167.0235986 168.2727653 173.1870390
174.4230177 175.8802961 177.4290187 180.4798204 182.7707905
183.3115436 187.4151401 193.5853098 196.6558163 198.8079094
201.2616527 205.8923533 206.9126638 210.0976668 212.9596456
214.6350820 217.7311455 220.1845525 222.0116367 222.9083642
224.1390135 225.2782835 228.4609176 230.7011270 233.4701751
235.6793925 237.4729151 239.1814834 241.1915044 244.8573196
245.3317912 251.4752628 252.4081350 253.9217991 255.5632047
256.9135991 258.4909220 259.9552668 261.8444641 264.2841492
267.8480770 268.9089118 272.2555055 274.1949416 276.5525852
277.2139036 280.0909996 282.5403060 285.5037549 285.9483386
286.7089507 288.7848398 290.9166115 295.0210247 295.6507168
297.7413819 298.4156365 302.4357273 302.6530183 304.4008884
305.9730932 310.1736774 311.4417893 315.2426309 316.4996179
317.4414127 318.9339751 320.2085871 323.4290685 325.0077644
327.0784748 329.1156116 330.5581598 333.2987476 333.4819300
335.6667881 338.4662505 340.5350186 341.0505268 343.2962257
347.3385614 347.8146017 350.4744908 353.0290550 356.0791442
356.6145018 359.2167931 360.9463337 361.1999513 363.1478313
364.9872962 366.2050255 368.1481573 370.9360759 372.4256117
374.9666495 375.8287560 376.7812240 377.8682745 380.3836340
382.4355025 385.9349649 388.1390841 388.8183208 391.5294167
392.7214710 394.5863233 396.4429868 397.3967399 399.1718094
401.5789691 401.7466672 402.5217121 404.3031035 406.0294017
408.0052440 409.4594868 411.9265895 415.4703486 416.8155979
418.6877989 421.1704355 422.3117271 423.6880083 425.0981584
426.0254054 427.3489136 429.1873318 431.4193422 432.9320517
433.0678950 435.8131038 437.2755695 441.1181612 443.6657611
443.8015662 444.8747584 447.0948820 448.2188284 449.3671271
450.6701720 451.2620483 452.5819597 454.5224748 454.8118302
456.4923142 458.1918929 460.6203312 461.3148294 464.5067451
465.9694762 466.8949983 470.0984694 471.1955634 472.0685373
475.1117389 476.3151272 478.2965913 478.7496763 480.6831606
481.7982223 482.5062746 483.9123981 485.3499981 487.6925273
490.3955481 491.6546638 492.3049256 492.7724659 494.5679165
495.3137718 497.3562788 499.8773847 501.1131796 502.2887010
504.2605910 506.7742092 508.0364708 508.3202261 508.9515440
511.8542224 512.4213215 513.6989432 515.8426402 517.7504180
518.2279302 519.6354419 520.8130812 523.0893386 523.7340849
524.6496465 526.0805431 528.1751008 529.0553237 529.8702572
530.7532715 532.1569778 533.2851175 534.2945375 536.0404303
536.3815762 537.6916744 538.8625388 539.3885031 541.2079943
542.2968437 542.7635960 544.1256855 546.0134700 546.4727330
547.6396989 548.2577766 549.1525025 551.3813102 551.9397329
553.7301755 554.3412914 555.1392424 555.6724148 556.4808555
557.1789123 559.8138974 560.7239158 561.4653941 563.0484450
563.9969593 565.5796523 566.6251805 568.4175417 570.4452001
570.7184481 572.8016587 574.5051837 576.1788963 576.6395768
578.7168962 579.9042200 581.5677003 582.9449551 584.4512255
585.6957957 585.9977312 586.8116408 588.2854288 588.9640871
589.3337455 590.9373405 592.6891788 593.8565717 594.9764568
596.1212768 596.9649085 600.3804249 600.8813944 602.9506033
604.4789207 606.2351337 607.6735509 609.6333196 612.4472654
613.0958422 616.1745042 617.0974914 618.1218951 619.3427163
621.7644875 622.5128692 625.9931049 627.5643333 628.7997096
629.3153182 632.1334876 633.3671685 633.6212849 636.3075552
639.0522763 639.3228475 640.3798332 641.1744305 643.0433315
645.8036756 646.3834985 647.0823043 648.1783271 648.9342876
650.9831359 651.5532226 652.8410915 654.0348759 654.9559078
656.3963476 657.9260859 659.3509430 661.3137417 661.4466463
662.6639558 664.7217900 667.2351454 668.5087077 669.3538778
671.4582579 673.2348513 676.1334358 676.9921824 677.5358346
678.9578380 680.3410764 681.6045732 682.2074743 683.4004707
684.6640710 686.3200127 687.7736785 688.3277808 689.3358595
692.0508695 692.3135759 693.7800417 695.7697247 696.6363428
699.2322995 700.6318840 702.7173122 704.1227863 704.5960618
705.6112718 707.3165176 708.3643696 709.2656356 712.0454753
713.1548409 713.5793825 715.5088534 717.5851697 718.6393956
723.1935109 725.4975283 726.5265705 727.8683292 729.4416850
730.3646218 733.3045258 734.2861359 734.9881640 736.8946131
737.4303619 738.8793932 739.8081888 741.8539776 742.1150787
743.5235941 745.1551781 746.0689283 747.0923793 748.8920989
753.1054040 753.2660573 754.6046848 755.8579554 756.8099235
758.8651705 760.0675921 761.5140267 762.2451239 764.6187552
765.1267694 766.4558693 767.2162759 769.7365836 773.4462041
774.1810572 775.0378432 776.5779722 778.1343096 779.3037083
780.0708313 782.2319867 783.5006579 784.3773487 785.2515210
786.7324596 789.7279481 790.8925041 792.8055399 793.9454437
796.0886319 797.0053029 799.1046133 800.6643563 801.9633214
803.8699361 805.6990210 806.3991463 807.5694727 809.5001055
811.0552193 811.9951041 812.7117887 814.6814182 817.0467155
818.2382277 818.8154425 822.2864780 823.2527766 823.9951889
827.4010441 830.0649320 830.7986772 831.1829827 836.3234559
837.4766991 840.0183442 841.1075733 842.9939965 844.7012905
847.1593110 849.9961222 851.1762204 853.1855450 853.9459484
856.1325238 857.4467475 858.3074797 860.9093242 863.1317503
864.3424151 865.8802481 866.1788387 868.2263721 869.9465689
872.5187531 874.1834086 875.4899477 877.5571682 878.7193575
879.6857018 882.3735373 884.9985598 886.5612490 888.9949419
890.2759823 892.3253813 894.3721912 897.0428584 898.0299560
899.4864606 900.4333865 905.6242719 907.4421127 909.2331862
914.1547963 914.8021598 916.8167307 919.5317197 921.5999123
923.8139239 929.4222567 931.4292353 934.8006486 936.9273339
938.6562363 940.3678320 942.2518075 945.1594509 951.0583046
957.2225318 959.3099007 962.1036574 965.9253134 968.1685925
971.7157448 974.2114108 977.3340943 978.8742149 979.4053849
983.6153782 986.5403781 989.6088161 992.0805857 1000.0194459
1003.5566866 1005.6685905 1009.1832928 1011.9463894 1013.8385088
1021.5494876 1023.9656033 1025.1531538 1028.7157575 1035.2976769
1038.0174354 1041.0137920 1044.3543811 1048.1286668 1051.8586989
1055.9027982 1061.8632123 1065.5663060 1071.4934228 1087.1822439
1094.5852599 1100.2300246 1105.1432896
Diagstd> Normal end.
B-factor analysis
Bfactors> Version 1.22, Bordeaux.
Getnam> Eigenvector filename ?
Getnam> 240415005805254616.eigenfacs
Openam> file on opening on unit 10:
240415005805254616.eigenfacs
Getnam> Corresponding pdb filename ?
Getnam> 240415005805254616.atom
Openam> file on opening on unit 11:
240415005805254616.atom
Getnum> Number of skipped eigenvectors ?
Getnum> 0
Getnum> Number of usefull eigenvectors ?
Getnum> 10000
%Getnum-Err: number larger than 106 This is not allowed. Sorry.
Rdatompdb> Reading pdb file.
Rdatompdb> End of file reached.
Rdatompdb> Number of I/O errors: 0
Rdatompdb> Number of residues found = 186
First residue number = 96
Last residue number = 1291
Number of atoms found = 186
Mean number per residue = 1.0
Rdmodfacs> Old Blzpack file format detected.
Rdmodfacs> Numero du vecteur CERFACS en lecture: 1
Rdmodfacs> Valeur propre du vecteur en lecture: 9.9507E-10
Rdmodfacs> Numero du vecteur CERFACS en lecture: 2
Rdmodfacs> Valeur propre du vecteur en lecture: 9.9828E-10
Rdmodfacs> Numero du vecteur CERFACS en lecture: 3
Rdmodfacs> Valeur propre du vecteur en lecture: 1.0004E-09
Rdmodfacs> Numero du vecteur CERFACS en lecture: 4
Rdmodfacs> Valeur propre du vecteur en lecture: 1.0016E-09
Rdmodfacs> Numero du vecteur CERFACS en lecture: 5
Rdmodfacs> Valeur propre du vecteur en lecture: 1.0032E-09
Rdmodfacs> Numero du vecteur CERFACS en lecture: 6
Rdmodfacs> Valeur propre du vecteur en lecture: 1.0057E-09
Rdmodfacs> Numero du vecteur CERFACS en lecture: 7
Rdmodfacs> Valeur propre du vecteur en lecture: 2.4631E-03
Rdmodfacs> Numero du vecteur CERFACS en lecture: 8
Rdmodfacs> Valeur propre du vecteur en lecture: 5.6593E-02
Rdmodfacs> Numero du vecteur CERFACS en lecture: 9
Rdmodfacs> Valeur propre du vecteur en lecture: 7.1757E-02
Rdmodfacs> Numero du vecteur CERFACS en lecture: 10
Rdmodfacs> Valeur propre du vecteur en lecture: 0.1035
Rdmodfacs> Numero du vecteur CERFACS en lecture: 11
Rdmodfacs> Valeur propre du vecteur en lecture: 0.1156
Rdmodfacs> Numero du vecteur CERFACS en lecture: 12
Rdmodfacs> Valeur propre du vecteur en lecture: 0.1290
Rdmodfacs> Numero du vecteur CERFACS en lecture: 13
Rdmodfacs> Valeur propre du vecteur en lecture: 0.1588
Rdmodfacs> Numero du vecteur CERFACS en lecture: 14
Rdmodfacs> Valeur propre du vecteur en lecture: 0.1748
Rdmodfacs> Numero du vecteur CERFACS en lecture: 15
Rdmodfacs> Valeur propre du vecteur en lecture: 0.2014
Rdmodfacs> Numero du vecteur CERFACS en lecture: 16
Rdmodfacs> Valeur propre du vecteur en lecture: 0.2242
Rdmodfacs> Numero du vecteur CERFACS en lecture: 17
Rdmodfacs> Valeur propre du vecteur en lecture: 0.2440
Rdmodfacs> Numero du vecteur CERFACS en lecture: 18
Rdmodfacs> Valeur propre du vecteur en lecture: 0.2826
Rdmodfacs> Numero du vecteur CERFACS en lecture: 19
Rdmodfacs> Valeur propre du vecteur en lecture: 0.2927
Rdmodfacs> Numero du vecteur CERFACS en lecture: 20
Rdmodfacs> Valeur propre du vecteur en lecture: 0.3754
Rdmodfacs> Numero du vecteur CERFACS en lecture: 21
Rdmodfacs> Valeur propre du vecteur en lecture: 0.4093
Rdmodfacs> Numero du vecteur CERFACS en lecture: 22
Rdmodfacs> Valeur propre du vecteur en lecture: 0.4309
Rdmodfacs> Numero du vecteur CERFACS en lecture: 23
Rdmodfacs> Valeur propre du vecteur en lecture: 0.4990
Rdmodfacs> Numero du vecteur CERFACS en lecture: 24
Rdmodfacs> Valeur propre du vecteur en lecture: 0.5047
Rdmodfacs> Numero du vecteur CERFACS en lecture: 25
Rdmodfacs> Valeur propre du vecteur en lecture: 0.5910
Rdmodfacs> Numero du vecteur CERFACS en lecture: 26
Rdmodfacs> Valeur propre du vecteur en lecture: 0.6146
Rdmodfacs> Numero du vecteur CERFACS en lecture: 27
Rdmodfacs> Valeur propre du vecteur en lecture: 0.6663
Rdmodfacs> Numero du vecteur CERFACS en lecture: 28
Rdmodfacs> Valeur propre du vecteur en lecture: 0.7072
Rdmodfacs> Numero du vecteur CERFACS en lecture: 29
Rdmodfacs> Valeur propre du vecteur en lecture: 0.7995
Rdmodfacs> Numero du vecteur CERFACS en lecture: 30
Rdmodfacs> Valeur propre du vecteur en lecture: 0.8605
Rdmodfacs> Numero du vecteur CERFACS en lecture: 31
Rdmodfacs> Valeur propre du vecteur en lecture: 0.9076
Rdmodfacs> Numero du vecteur CERFACS en lecture: 32
Rdmodfacs> Valeur propre du vecteur en lecture: 0.9597
Rdmodfacs> Numero du vecteur CERFACS en lecture: 33
Rdmodfacs> Valeur propre du vecteur en lecture: 0.9613
Rdmodfacs> Numero du vecteur CERFACS en lecture: 34
Rdmodfacs> Valeur propre du vecteur en lecture: 1.001
Rdmodfacs> Numero du vecteur CERFACS en lecture: 35
Rdmodfacs> Valeur propre du vecteur en lecture: 1.036
Rdmodfacs> Numero du vecteur CERFACS en lecture: 36
Rdmodfacs> Valeur propre du vecteur en lecture: 1.089
Rdmodfacs> Numero du vecteur CERFACS en lecture: 37
Rdmodfacs> Valeur propre du vecteur en lecture: 1.181
Rdmodfacs> Numero du vecteur CERFACS en lecture: 38
Rdmodfacs> Valeur propre du vecteur en lecture: 1.240
Rdmodfacs> Numero du vecteur CERFACS en lecture: 39
Rdmodfacs> Valeur propre du vecteur en lecture: 1.343
Rdmodfacs> Numero du vecteur CERFACS en lecture: 40
Rdmodfacs> Valeur propre du vecteur en lecture: 1.378
Rdmodfacs> Numero du vecteur CERFACS en lecture: 41
Rdmodfacs> Valeur propre du vecteur en lecture: 1.417
Rdmodfacs> Numero du vecteur CERFACS en lecture: 42
Rdmodfacs> Valeur propre du vecteur en lecture: 1.456
Rdmodfacs> Numero du vecteur CERFACS en lecture: 43
Rdmodfacs> Valeur propre du vecteur en lecture: 1.551
Rdmodfacs> Numero du vecteur CERFACS en lecture: 44
Rdmodfacs> Valeur propre du vecteur en lecture: 1.625
Rdmodfacs> Numero du vecteur CERFACS en lecture: 45
Rdmodfacs> Valeur propre du vecteur en lecture: 1.727
Rdmodfacs> Numero du vecteur CERFACS en lecture: 46
Rdmodfacs> Valeur propre du vecteur en lecture: 1.827
Rdmodfacs> Numero du vecteur CERFACS en lecture: 47
Rdmodfacs> Valeur propre du vecteur en lecture: 1.888
Rdmodfacs> Numero du vecteur CERFACS en lecture: 48
Rdmodfacs> Valeur propre du vecteur en lecture: 1.922
Rdmodfacs> Numero du vecteur CERFACS en lecture: 49
Rdmodfacs> Valeur propre du vecteur en lecture: 1.969
Rdmodfacs> Numero du vecteur CERFACS en lecture: 50
Rdmodfacs> Valeur propre du vecteur en lecture: 2.073
Rdmodfacs> Numero du vecteur CERFACS en lecture: 51
Rdmodfacs> Valeur propre du vecteur en lecture: 2.148
Rdmodfacs> Numero du vecteur CERFACS en lecture: 52
Rdmodfacs> Valeur propre du vecteur en lecture: 2.249
Rdmodfacs> Numero du vecteur CERFACS en lecture: 53
Rdmodfacs> Valeur propre du vecteur en lecture: 2.366
Rdmodfacs> Numero du vecteur CERFACS en lecture: 54
Rdmodfacs> Valeur propre du vecteur en lecture: 2.401
Rdmodfacs> Numero du vecteur CERFACS en lecture: 55
Rdmodfacs> Valeur propre du vecteur en lecture: 2.544
Rdmodfacs> Numero du vecteur CERFACS en lecture: 56
Rdmodfacs> Valeur propre du vecteur en lecture: 2.580
Rdmodfacs> Numero du vecteur CERFACS en lecture: 57
Rdmodfacs> Valeur propre du vecteur en lecture: 2.623
Rdmodfacs> Numero du vecteur CERFACS en lecture: 58
Rdmodfacs> Valeur propre du vecteur en lecture: 2.670
Rdmodfacs> Numero du vecteur CERFACS en lecture: 59
Rdmodfacs> Valeur propre du vecteur en lecture: 2.762
Rdmodfacs> Numero du vecteur CERFACS en lecture: 60
Rdmodfacs> Valeur propre du vecteur en lecture: 2.833
Rdmodfacs> Numero du vecteur CERFACS en lecture: 61
Rdmodfacs> Valeur propre du vecteur en lecture: 2.850
Rdmodfacs> Numero du vecteur CERFACS en lecture: 62
Rdmodfacs> Valeur propre du vecteur en lecture: 2.979
Rdmodfacs> Numero du vecteur CERFACS en lecture: 63
Rdmodfacs> Valeur propre du vecteur en lecture: 3.178
Rdmodfacs> Numero du vecteur CERFACS en lecture: 64
Rdmodfacs> Valeur propre du vecteur en lecture: 3.280
Rdmodfacs> Numero du vecteur CERFACS en lecture: 65
Rdmodfacs> Valeur propre du vecteur en lecture: 3.352
Rdmodfacs> Numero du vecteur CERFACS en lecture: 66
Rdmodfacs> Valeur propre du vecteur en lecture: 3.435
Rdmodfacs> Numero du vecteur CERFACS en lecture: 67
Rdmodfacs> Valeur propre du vecteur en lecture: 3.595
Rdmodfacs> Numero du vecteur CERFACS en lecture: 68
Rdmodfacs> Valeur propre du vecteur en lecture: 3.631
Rdmodfacs> Numero du vecteur CERFACS en lecture: 69
Rdmodfacs> Valeur propre du vecteur en lecture: 3.743
Rdmodfacs> Numero du vecteur CERFACS en lecture: 70
Rdmodfacs> Valeur propre du vecteur en lecture: 3.846
Rdmodfacs> Numero du vecteur CERFACS en lecture: 71
Rdmodfacs> Valeur propre du vecteur en lecture: 3.907
Rdmodfacs> Numero du vecteur CERFACS en lecture: 72
Rdmodfacs> Valeur propre du vecteur en lecture: 4.020
Rdmodfacs> Numero du vecteur CERFACS en lecture: 73
Rdmodfacs> Valeur propre du vecteur en lecture: 4.111
Rdmodfacs> Numero du vecteur CERFACS en lecture: 74
Rdmodfacs> Valeur propre du vecteur en lecture: 4.180
Rdmodfacs> Numero du vecteur CERFACS en lecture: 75
Rdmodfacs> Valeur propre du vecteur en lecture: 4.214
Rdmodfacs> Numero du vecteur CERFACS en lecture: 76
Rdmodfacs> Valeur propre du vecteur en lecture: 4.260
Rdmodfacs> Numero du vecteur CERFACS en lecture: 77
Rdmodfacs> Valeur propre du vecteur en lecture: 4.304
Rdmodfacs> Numero du vecteur CERFACS en lecture: 78
Rdmodfacs> Valeur propre du vecteur en lecture: 4.426
Rdmodfacs> Numero du vecteur CERFACS en lecture: 79
Rdmodfacs> Valeur propre du vecteur en lecture: 4.513
Rdmodfacs> Numero du vecteur CERFACS en lecture: 80
Rdmodfacs> Valeur propre du vecteur en lecture: 4.622
Rdmodfacs> Numero du vecteur CERFACS en lecture: 81
Rdmodfacs> Valeur propre du vecteur en lecture: 4.710
Rdmodfacs> Numero du vecteur CERFACS en lecture: 82
Rdmodfacs> Valeur propre du vecteur en lecture: 4.782
Rdmodfacs> Numero du vecteur CERFACS en lecture: 83
Rdmodfacs> Valeur propre du vecteur en lecture: 4.851
Rdmodfacs> Numero du vecteur CERFACS en lecture: 84
Rdmodfacs> Valeur propre du vecteur en lecture: 4.933
Rdmodfacs> Numero du vecteur CERFACS en lecture: 85
Rdmodfacs> Valeur propre du vecteur en lecture: 5.084
Rdmodfacs> Numero du vecteur CERFACS en lecture: 86
Rdmodfacs> Valeur propre du vecteur en lecture: 5.104
Rdmodfacs> Numero du vecteur CERFACS en lecture: 87
Rdmodfacs> Valeur propre du vecteur en lecture: 5.363
Rdmodfacs> Numero du vecteur CERFACS en lecture: 88
Rdmodfacs> Valeur propre du vecteur en lecture: 5.403
Rdmodfacs> Numero du vecteur CERFACS en lecture: 89
Rdmodfacs> Valeur propre du vecteur en lecture: 5.468
Rdmodfacs> Numero du vecteur CERFACS en lecture: 90
Rdmodfacs> Valeur propre du vecteur en lecture: 5.539
Rdmodfacs> Numero du vecteur CERFACS en lecture: 91
Rdmodfacs> Valeur propre du vecteur en lecture: 5.597
Rdmodfacs> Numero du vecteur CERFACS en lecture: 92
Rdmodfacs> Valeur propre du vecteur en lecture: 5.666
Rdmodfacs> Numero du vecteur CERFACS en lecture: 93
Rdmodfacs> Valeur propre du vecteur en lecture: 5.731
Rdmodfacs> Numero du vecteur CERFACS en lecture: 94
Rdmodfacs> Valeur propre du vecteur en lecture: 5.814
Rdmodfacs> Numero du vecteur CERFACS en lecture: 95
Rdmodfacs> Valeur propre du vecteur en lecture: 5.923
Rdmodfacs> Numero du vecteur CERFACS en lecture: 96
Rdmodfacs> Valeur propre du vecteur en lecture: 6.084
Rdmodfacs> Numero du vecteur CERFACS en lecture: 97
Rdmodfacs> Valeur propre du vecteur en lecture: 6.132
Rdmodfacs> Numero du vecteur CERFACS en lecture: 98
Rdmodfacs> Valeur propre du vecteur en lecture: 6.286
Rdmodfacs> Numero du vecteur CERFACS en lecture: 99
Rdmodfacs> Valeur propre du vecteur en lecture: 6.376
Rdmodfacs> Numero du vecteur CERFACS en lecture: 100
Rdmodfacs> Valeur propre du vecteur en lecture: 6.486
Rdmodfacs> Numero du vecteur CERFACS en lecture: 101
Rdmodfacs> Valeur propre du vecteur en lecture: 6.517
Rdmodfacs> Numero du vecteur CERFACS en lecture: 102
Rdmodfacs> Valeur propre du vecteur en lecture: 6.653
Rdmodfacs> Numero du vecteur CERFACS en lecture: 103
Rdmodfacs> Valeur propre du vecteur en lecture: 6.770
Rdmodfacs> Numero du vecteur CERFACS en lecture: 104
Rdmodfacs> Valeur propre du vecteur en lecture: 6.912
Rdmodfacs> Numero du vecteur CERFACS en lecture: 105
Rdmodfacs> Valeur propre du vecteur en lecture: 6.934
Rdmodfacs> Numero du vecteur CERFACS en lecture: 106
Rdmodfacs> Valeur propre du vecteur en lecture: 6.971
%Rdmodfacs-Wn> More than 106 vectors in file.
Bfactors> 106 vectors, 558 coordinates in file.
Openam> file on opening on unit 12:
bfactors.pred
Bfactors> Best zero-eigenvalue found : 0.000000
Bfactors> 6 eigenvalues less than : 0.000000
Bfactors> Lowest non-zero eigenvalue : 0.002463
Bfactors> 100 eigenvectors will be considered.
Bfactors> Rotation-Tranlation modes are skipped.
Bfactors> Mass-weighted B-factors are computed.
(CHARMM units assumed for eigenvalues)
Bfactors> Correlation= 0.104 for 185 C-alpha atoms.
Bfactors> = 45.737 +/- 254.90
Bfactors> = 27.528 +/- 13.47
Bfactors> Shiftng-fct= -18.209
Bfactors> Scaling-fct= 0.053
Bfactors> Predicted, Scaled and Experimental B-factors are saved.
Bfactors> Normal end.
check_modes
getting mode 7
running: ../../bin/get_modes.sh 240415005805254616 7 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 7
calculating perturbed structure for DQ=-100
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-80
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-60
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-40
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-20
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=0
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=20
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=40
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=60
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=80
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=100
240415005805254616.eigenfacs
240415005805254616.atom
making animated gifs
11 models are in 240415005805254616.7.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240415005805254616.7.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240415005805254616.7.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 8
running: ../../bin/get_modes.sh 240415005805254616 8 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 8
calculating perturbed structure for DQ=-100
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-80
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-60
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-40
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-20
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=0
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=20
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=40
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=60
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=80
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=100
240415005805254616.eigenfacs
240415005805254616.atom
making animated gifs
11 models are in 240415005805254616.8.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240415005805254616.8.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240415005805254616.8.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 9
running: ../../bin/get_modes.sh 240415005805254616 9 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 9
calculating perturbed structure for DQ=-100
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-80
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-60
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-40
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-20
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=0
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=20
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=40
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=60
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=80
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=100
240415005805254616.eigenfacs
240415005805254616.atom
making animated gifs
11 models are in 240415005805254616.9.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240415005805254616.9.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240415005805254616.9.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 10
running: ../../bin/get_modes.sh 240415005805254616 10 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 10
calculating perturbed structure for DQ=-100
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-80
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-60
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-40
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-20
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=0
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=20
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=40
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=60
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=80
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=100
240415005805254616.eigenfacs
240415005805254616.atom
making animated gifs
11 models are in 240415005805254616.10.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240415005805254616.10.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240415005805254616.10.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 11
running: ../../bin/get_modes.sh 240415005805254616 11 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 11
calculating perturbed structure for DQ=-100
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-80
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-60
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-40
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-20
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=0
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=20
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=40
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=60
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=80
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=100
240415005805254616.eigenfacs
240415005805254616.atom
making animated gifs
11 models are in 240415005805254616.11.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240415005805254616.11.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240415005805254616.11.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 12
running: ../../bin/get_modes.sh 240415005805254616 12 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 12
calculating perturbed structure for DQ=-100
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-80
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-60
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-40
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-20
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=0
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=20
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=40
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=60
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=80
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=100
240415005805254616.eigenfacs
240415005805254616.atom
making animated gifs
11 models are in 240415005805254616.12.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240415005805254616.12.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240415005805254616.12.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 13
running: ../../bin/get_modes.sh 240415005805254616 13 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 13
calculating perturbed structure for DQ=-100
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-80
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-60
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-40
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-20
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=0
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=20
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=40
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=60
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=80
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=100
240415005805254616.eigenfacs
240415005805254616.atom
making animated gifs
11 models are in 240415005805254616.13.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240415005805254616.13.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240415005805254616.13.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 14
running: ../../bin/get_modes.sh 240415005805254616 14 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 14
calculating perturbed structure for DQ=-100
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-80
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-60
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-40
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-20
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=0
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=20
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=40
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=60
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=80
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=100
240415005805254616.eigenfacs
240415005805254616.atom
making animated gifs
11 models are in 240415005805254616.14.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240415005805254616.14.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240415005805254616.14.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 15
running: ../../bin/get_modes.sh 240415005805254616 15 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 15
calculating perturbed structure for DQ=-100
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-80
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-60
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-40
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-20
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=0
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=20
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=40
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=60
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=80
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=100
240415005805254616.eigenfacs
240415005805254616.atom
making animated gifs
11 models are in 240415005805254616.15.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240415005805254616.15.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240415005805254616.15.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 16
running: ../../bin/get_modes.sh 240415005805254616 16 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 16
calculating perturbed structure for DQ=-100
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-80
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-60
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-40
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=-20
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=0
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=20
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=40
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=60
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=80
240415005805254616.eigenfacs
240415005805254616.atom
calculating perturbed structure for DQ=100
240415005805254616.eigenfacs
240415005805254616.atom
making animated gifs
11 models are in 240415005805254616.16.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240415005805254616.16.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240415005805254616.16.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
240415005805254616.10.pdb
240415005805254616.11.pdb
240415005805254616.12.pdb
240415005805254616.13.pdb
240415005805254616.14.pdb
240415005805254616.15.pdb
240415005805254616.16.pdb
240415005805254616.7.pdb
240415005805254616.8.pdb
240415005805254616.9.pdb
STDERR:
real 0m2.465s
user 0m2.457s
sys 0m0.008s
../../bin/check_modes: error while loading shared libraries: libgfortran.so.3: cannot open shared object file: No such file or directory
mv: cannot stat 'Chkmod.res': No such file or directory
cat: 240415005805254616.Chkmod.res: No such file or directory
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.
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