CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  Ecoli yecd  ***

Normal Mode Analysis for ID 251228182821571726

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.6926
mode 8 1.24 0.6759
mode 9 1.40 0.7278
mode 10 1.73 0.6159
mode 11 1.74 0.6381
mode 12 1.79 0.5924
mode 13 1.99 0.4864
mode 14 2.09 0.4633
mode 15 2.30 0.6939
mode 16 2.36 0.7065
mode 17 2.44 0.7645
mode 18 2.48 0.7259
mode 19 2.79 0.6410
mode 20 2.81 0.5509
mode 21 3.00 0.3192
mode 22 3.04 0.3935
mode 23 3.07 0.6183
mode 24 3.12 0.1696
mode 25 3.17 0.4164
mode 26 3.19 0.3637
mode 27 3.22 0.3957
mode 28 3.29 0.3045
mode 29 3.42 0.5418
mode 30 3.43 0.4578
mode 31 3.53 0.4598
mode 32 3.58 0.2315
mode 33 3.62 0.2980
mode 34 3.65 0.3585
mode 35 3.78 0.4710
mode 36 3.81 0.3703
mode 37 3.82 0.4188
mode 38 3.84 0.3567
mode 39 3.91 0.3028
mode 40 4.02 0.0806
mode 41 4.08 0.2779
mode 42 4.12 0.4063
mode 43 4.14 0.3019
mode 44 4.21 0.3183
mode 45 4.23 0.2430
mode 46 4.27 0.4525
mode 47 4.31 0.3943
mode 48 4.35 0.3267
mode 49 4.40 0.3989
mode 50 4.40 0.4045
mode 51 4.42 0.3571
mode 52 4.45 0.2803
mode 53 4.48 0.2173
mode 54 4.50 0.3593
mode 55 4.53 0.3521
mode 56 4.54 0.2798
mode 57 4.58 0.4046
mode 58 4.59 0.4885
mode 59 4.63 0.4279
mode 60 4.64 0.2858
mode 61 4.67 0.4562
mode 62 4.70 0.3317
mode 63 4.72 0.5075
mode 64 4.75 0.3182
mode 65 4.75 0.3696
mode 66 4.77 0.3423
mode 67 4.80 0.1804
mode 68 4.83 0.3784
mode 69 4.85 0.3743
mode 70 4.88 0.3461
mode 71 4.92 0.4160
mode 72 4.97 0.5132
mode 73 5.02 0.3837
mode 74 5.02 0.4686
mode 75 5.06 0.4521
mode 76 5.11 0.3617
mode 77 5.13 0.3787
mode 78 5.14 0.3889
mode 79 5.19 0.5020
mode 80 5.19 0.5164
mode 81 5.21 0.5302
mode 82 5.27 0.4560
mode 83 5.29 0.4585
mode 84 5.33 0.5610
mode 85 5.36 0.4798
mode 86 5.37 0.4306
mode 87 5.38 0.4939
mode 88 5.42 0.4543
mode 89 5.45 0.3070
mode 90 5.47 0.4863
mode 91 5.51 0.4935
mode 92 5.53 0.5233
mode 93 5.55 0.5072
mode 94 5.56 0.3824
mode 95 5.59 0.3350
mode 96 5.62 0.4851
mode 97 5.67 0.3457
mode 98 5.69 0.4314
mode 99 5.73 0.4277
mode 100 5.74 0.4229
mode 101 5.77 0.3304
mode 102 5.79 0.4735
mode 103 5.82 0.4683
mode 104 5.85 0.4445
mode 105 5.88 0.3681
mode 106 5.89 0.5274

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.