CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  DNA  ***

Normal Mode Analysis for ID 251228183250579442

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.6224
mode 8 1.17 0.7417
mode 9 1.67 0.5238
mode 10 2.00 0.5220
mode 11 2.62 0.5637
mode 12 3.15 0.4277
mode 13 3.37 0.5467
mode 14 3.69 0.5158
mode 15 3.92 0.4414
mode 16 4.25 0.3367
mode 17 4.38 0.4318
mode 18 4.55 0.3744
mode 19 4.83 0.4813
mode 20 5.03 0.4919
mode 21 5.45 0.5734
mode 22 5.53 0.6231
mode 23 5.64 0.4427
mode 24 5.83 0.5438
mode 25 6.05 0.3536
mode 26 6.10 0.6348
mode 27 6.47 0.4065
mode 28 6.49 0.3788
mode 29 6.70 0.4172
mode 30 6.74 0.6507
mode 31 6.91 0.5637
mode 32 7.05 0.3731
mode 33 7.38 0.2775
mode 34 7.61 0.5501
mode 35 7.64 0.4652
mode 36 7.76 0.4941
mode 37 7.92 0.5227
mode 38 8.21 0.4513
mode 39 8.23 0.2099
mode 40 8.48 0.4231
mode 41 8.59 0.5246
mode 42 8.62 0.4962
mode 43 8.69 0.3549
mode 44 9.07 0.2038
mode 45 9.28 0.4121
mode 46 9.53 0.7047
mode 47 9.71 0.5040
mode 48 9.73 0.5860
mode 49 9.87 0.5062
mode 50 10.23 0.6268
mode 51 10.43 0.6168
mode 52 10.55 0.3007
mode 53 10.70 0.6098
mode 54 10.81 0.5525
mode 55 10.89 0.6709
mode 56 11.07 0.6675
mode 57 11.27 0.6082
mode 58 11.30 0.6125
mode 59 11.44 0.6557
mode 60 11.67 0.6430
mode 61 11.69 0.3994
mode 62 11.80 0.6376
mode 63 11.97 0.5255
mode 64 12.04 0.6871
mode 65 12.16 0.5859
mode 66 12.19 0.6621
mode 67 12.29 0.7029
mode 68 12.31 0.3224
mode 69 12.50 0.5120
mode 70 12.64 0.5162
mode 71 12.69 0.4934
mode 72 12.72 0.5842
mode 73 12.85 0.4721
mode 74 12.99 0.6679
mode 75 13.03 0.3765
mode 76 13.06 0.5716
mode 77 13.15 0.5906
mode 78 13.19 0.5378
mode 79 13.31 0.5670
mode 80 13.36 0.5126
mode 81 13.42 0.5017
mode 82 13.50 0.4747
mode 83 13.52 0.6191
mode 84 13.58 0.5347
mode 85 13.67 0.5710
mode 86 13.69 0.4920
mode 87 13.73 0.5575
mode 88 13.77 0.4823
mode 89 13.85 0.5348
mode 90 13.90 0.5488
mode 91 13.94 0.6507
mode 92 14.05 0.6653
mode 93 14.10 0.5266
mode 94 14.17 0.4869
mode 95 14.25 0.4814
mode 96 14.36 0.5606
mode 97 14.38 0.5018
mode 98 14.41 0.4858
mode 99 14.50 0.6240
mode 100 14.64 0.6600
mode 101 14.70 0.6942
mode 102 14.85 0.5956
mode 103 14.95 0.6921
mode 104 15.11 0.6451
mode 105 15.18 0.6890
mode 106 15.36 0.6678

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.