Should you encounter any unexpected behaviour,
please let us know.
elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.

STDOUT:

Build Tirion matrix:
 Pdbmat> Computes the Hessian matrix, using an Elastic Network Model.
 Pdbmat> Version 3.50, Fevrier 2004.    

 Pdbmat> Options to be read in pdbmat.dat file.

 Pdbmat> Coordinate filename     = 251228183405581878.atom

 Pdbmat> Distance cutoff         =       8.00
         Force constant          =      10.00
         Origin of mass values   =       CONS
 Pdbmat> Levelshift              =    1.0E-09
         PRINTing level          =          2

 Pdbmat> Coordinate file 251228183405581878.atom to be opened.

 Openam> File opened: 251228183405581878.atom

 Pdbmat> Coordinate file in PDB format.

 Rdatompdb> Reading pdb file.
 Rdatompdb> End of file reached.
 Rdatompdb> Number of I/O errors:      0

 Rdatompdb> Number of residues found =   4526
            First residue number     =     38
            Last  residue number     =   4563
            Number of atoms found    =  36083
            Mean number per residue  =      8.0

 Pdbmat> Coordinate statistics: 
 =   249.661647 +/-    42.063888 From:   159.699000 To:   333.073000
 =   248.523480 +/-    56.448228 From:   138.169000 To:   361.451000
 =   260.137039 +/-    66.578223 From:   141.333000 To:   388.458000
 Pdbmat> Masses are all set to one.

 Openam> File opened: pdbmat.xyzm
 Pdbmat> Coordinates and masses considered are saved.

 Openam> File opened: pdbmat.sdijb

 Pdbmat> Matrix statistics:

 Pdbmat> The matrix is  -2.0816 % Filled.
 Pdbmat>     12145487  non-zero elements.
 Pdbmat>      1325666 atom-atom interactions.

 Pdbmat> Number per atom=     73.48 +/-     16.34
         Maximum number =    126
         Minimum number =     12

 Pdbmat> Matrix trace   = 2.651332E+07
 Pdbmat> Larger element =  482.995    
 Pdbmat>      0 elements larger than +/-  1.0E+10

 Pdbmat> Normal end.
Diagonalize Tirion matrix using diagrtb
 Diagrtb> Diagonalizes a matrix, using the RTB/BNM approximation.
 Diagrtb> Version 2.52, November 2004. 
 Diagrtb> Options to be read in diagrtb.dat file.

 Diagrtb> Options taken into account:

 MATRix filename          = pdbmat.sdijb
 COORdinates filename     = 251228183405581878.atom
 Eigenvector OUTPut file  = matrix.eigenrtb
 Nb of VECTors required   =        106
 EigeNVALues chosen       =       LOWE
 Type of SUBStructuring   =       NONE
 Nb of residues per BLOck =        500
 Origin of MASS values    =       CONS
 MATRix FORMat            =       BINA
 Temporary files cleaning =       ALL 
 Output PRINting level    =          2

 Diagrtb> Memory allocation for Blocpdb.

 Blocpdb> Entering in.

 Openam> file on opening on unit     10:
 diagrtb_work.xyzm   

 Blocpdb> Coordinate file 251228183405581878.atom to be opened.

 Openam> file on opening on unit     11:
 251228183405581878.atom                                                                                                         

 Blocpdb> Coordinate file in PDB format.

 Blocpdb> 36083 atoms picked in pdb file.
 Blocpdb>   All masses set to unity.
 Blocpdb> Coordinate file is rewritten.

 Blocpdb> Substructuring:
 Blocpdb>   500 residue(s) per block.
 Blocpdb>  4526 residues.
 Blocpdb>  3935 atoms in block      1
 Block first atom:      1
 Blocpdb>  3897 atoms in block      2
 Block first atom:   3936
 Blocpdb>  3978 atoms in block      3
 Block first atom:   7833
 Blocpdb>  3858 atoms in block      4
 Block first atom:  11811
 Blocpdb>  4175 atoms in block      5
 Block first atom:  15669
 Blocpdb>  3948 atoms in block      6
 Block first atom:  19844
 Blocpdb>  3948 atoms in block      7
 Block first atom:  23792
 Blocpdb>  3977 atoms in block      8
 Block first atom:  27740
 Blocpdb>  4164 atoms in block      9
 Block first atom:  31717
 Blocpdb>   203 atoms in block     10
 Block first atom:  35880

 Blocpdb>    10 blocks.

 Blocpdb> At most,   4175 atoms in each of them.
 Blocpdb> At least,   203 atoms in each of them.

 Blocpdb> Normal end of Blocpdb.

 Diagrtb> Memory allocation for Prepmat.
 Diagrtb> Memory allocation for RTB.
 Diagrtb> Memory allocation for Diagstd.

%Diagrtb-Wn>        60 eigenvectors, only, can be determined.
 Diagrtb> Memory allocation for RTB_to_modes.

%Diagrtb-Er> IIWKMX up to:    313851251 Maximum allowed is LIWORK=      5000000

%Diagrtb-Er> IRWKMX up to:   1512694351 Maximum allowed is LRWORK=     32000000

%Diagrtb-Er> Not enough memory allowed for working arrays. Sorry.
 Lower the number of blocks, the sizes of the largest ones...
 Or recompile DIAGRTB with larger WORKing arrays.



STDERR:
STOP *Working arrays allocation error*

real	0m0.164s
user	0m0.154s
sys	0m0.010s

• K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
• K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.