CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  PTHR  ***

Normal Mode Analysis for ID 2601161635352676734

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.2982
mode 8 1.08 0.3947
mode 9 1.13 0.6225
mode 10 1.16 0.6134
mode 11 1.17 0.5744
mode 12 1.51 0.3960
mode 13 1.73 0.5982
mode 14 1.95 0.3946
mode 15 1.99 0.4471
mode 16 2.31 0.6659
mode 17 2.32 0.6491
mode 18 2.58 0.5716
mode 19 2.66 0.4593
mode 20 2.74 0.5582
mode 21 2.78 0.6232
mode 22 2.85 0.4530
mode 23 2.90 0.3361
mode 24 3.16 0.2977
mode 25 3.18 0.1997
mode 26 3.27 0.3408
mode 27 3.41 0.4446
mode 28 3.48 0.2557
mode 29 3.49 0.3982
mode 30 3.52 0.2378
mode 31 3.63 0.0774
mode 32 3.64 0.2651
mode 33 3.70 0.2053
mode 34 3.75 0.1286
mode 35 3.82 0.3802
mode 36 3.88 0.1543
mode 37 3.90 0.2069
mode 38 3.95 0.1372
mode 39 3.97 0.1392
mode 40 4.03 0.1857
mode 41 4.12 0.3565
mode 42 4.18 0.2593
mode 43 4.21 0.5696
mode 44 4.26 0.3879
mode 45 4.32 0.4786
mode 46 4.41 0.3203
mode 47 4.44 0.4357
mode 48 4.50 0.2111
mode 49 4.53 0.2359
mode 50 4.64 0.2171
mode 51 4.71 0.3446
mode 52 4.73 0.2753
mode 53 4.79 0.4517
mode 54 4.82 0.4263
mode 55 4.87 0.3168
mode 56 4.95 0.4505
mode 57 4.98 0.3806
mode 58 5.05 0.2175
mode 59 5.07 0.4107
mode 60 5.08 0.3809
mode 61 5.20 0.2987
mode 62 5.21 0.0948
mode 63 5.31 0.3039
mode 64 5.36 0.2816
mode 65 5.40 0.2866
mode 66 5.43 0.2468
mode 67 5.46 0.2598
mode 68 5.55 0.4470
mode 69 5.60 0.4559
mode 70 5.65 0.3778
mode 71 5.74 0.4183
mode 72 5.77 0.3811
mode 73 5.79 0.5143
mode 74 5.84 0.4381
mode 75 5.89 0.4417
mode 76 5.91 0.3852
mode 77 5.94 0.3803
mode 78 5.97 0.4126
mode 79 6.01 0.3348
mode 80 6.04 0.3354
mode 81 6.10 0.4087
mode 82 6.11 0.3844
mode 83 6.14 0.4552
mode 84 6.21 0.4002
mode 85 6.23 0.4280
mode 86 6.30 0.4163
mode 87 6.32 0.3816
mode 88 6.40 0.4562
mode 89 6.45 0.3857
mode 90 6.48 0.4229
mode 91 6.51 0.1904
mode 92 6.54 0.2576
mode 93 6.59 0.1681
mode 94 6.60 0.2209
mode 95 6.66 0.3037
mode 96 6.69 0.1312
mode 97 6.72 0.1430
mode 98 6.73 0.3836
mode 99 6.75 0.3805
mode 100 6.79 0.4250
mode 101 6.82 0.2806
mode 102 6.84 0.3727
mode 103 6.86 0.3662
mode 104 6.93 0.4229
mode 105 6.94 0.4016
mode 106 6.97 0.4405

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.