CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  HYDROLASE 06-SEP-12 4H01  ***

Normal Mode Analysis for ID 2601261848464192948

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 5 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0225
mode 8 1.31 0.0233
mode 9 2.76 0.0084
mode 10 5.51 0.0184
mode 11 6.19 0.0204
mode 12 9.87 0.0947
mode 13 11.12 0.1785
mode 14 11.96 0.5039
mode 15 12.68 0.3055
mode 16 14.15 0.4803
mode 17 15.19 0.0440
mode 18 15.38 0.4142
mode 19 16.68 0.3525
mode 20 17.17 0.2703
mode 21 18.47 0.0140
mode 22 19.10 0.2028
mode 23 20.68 0.5868
mode 24 20.82 0.3971
mode 25 21.48 0.5334
mode 26 21.58 0.6381
mode 27 22.51 0.6008
mode 28 22.91 0.4782
mode 29 23.44 0.4518
mode 30 23.98 0.3707
mode 31 24.52 0.0922
mode 32 25.00 0.3690
mode 33 25.74 0.4775
mode 34 26.16 0.3176
mode 35 26.45 0.4011
mode 36 26.91 0.1360
mode 37 27.30 0.2854
mode 38 27.44 0.1317
mode 39 27.93 0.3660
mode 40 28.26 0.5490
mode 41 28.77 0.5095
mode 42 29.05 0.2751
mode 43 29.61 0.4891
mode 44 30.07 0.5145
mode 45 30.63 0.4427
mode 46 30.83 0.4187
mode 47 30.95 0.6359
mode 48 31.84 0.5072
mode 49 32.22 0.4054
mode 50 32.65 0.4936
mode 51 32.84 0.4726
mode 52 33.50 0.5058
mode 53 33.70 0.5663
mode 54 34.08 0.2199
mode 55 34.45 0.5169
mode 56 34.51 0.5765
mode 57 34.65 0.5502
mode 58 34.97 0.4822
mode 59 35.44 0.4900
mode 60 35.76 0.5359
mode 61 35.92 0.4524
mode 62 36.26 0.4567
mode 63 36.52 0.3379
mode 64 36.99 0.4639
mode 65 37.23 0.4912
mode 66 37.50 0.3527
mode 67 37.78 0.4746
mode 68 37.82 0.4665
mode 69 38.25 0.4692
mode 70 38.66 0.5020
mode 71 39.21 0.4822
mode 72 39.43 0.4969
mode 73 39.61 0.3662
mode 74 39.76 0.4551
mode 75 40.09 0.4312
mode 76 40.21 0.3695
mode 77 40.60 0.5237
mode 78 40.83 0.4434
mode 79 41.22 0.3112
mode 80 41.36 0.4525
mode 81 41.55 0.4736
mode 82 41.77 0.5328
mode 83 41.97 0.4653
mode 84 42.15 0.4825
mode 85 42.56 0.4636
mode 86 42.66 0.4024
mode 87 42.99 0.4933
mode 88 43.25 0.4036
mode 89 43.30 0.5227
mode 90 43.61 0.4627
mode 91 43.77 0.4521
mode 92 43.94 0.4937
mode 93 44.23 0.4570
mode 94 44.56 0.5123
mode 95 44.60 0.4941
mode 96 44.88 0.5199
mode 97 45.20 0.5135
mode 98 45.29 0.4894
mode 99 45.66 0.4347
mode 100 45.77 0.3127
mode 101 45.96 0.2992
mode 102 46.30 0.4451
mode 103 46.49 0.1100
mode 104 46.69 0.4796
mode 105 46.78 0.2526
mode 106 46.91 0.3248

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.