CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  HYDROLASE 22-JUL-11 3T1I  ***

Normal Mode Analysis for ID 260128092010231762

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.5702
mode 8 1.71 0.6304
mode 9 1.93 0.6496
mode 10 2.44 0.3691
mode 11 2.65 0.4442
mode 12 2.91 0.4544
mode 13 3.12 0.3883
mode 14 3.37 0.6382
mode 15 3.97 0.4059
mode 16 4.48 0.5113
mode 17 5.28 0.5921
mode 18 5.55 0.6887
mode 19 5.74 0.4427
mode 20 5.91 0.4618
mode 21 6.59 0.4601
mode 22 6.81 0.3828
mode 23 6.91 0.4314
mode 24 7.10 0.5565
mode 25 7.44 0.5092
mode 26 7.70 0.4619
mode 27 8.52 0.3003
mode 28 8.82 0.5966
mode 29 9.01 0.6138
mode 30 10.32 0.6840
mode 31 10.55 0.6086
mode 32 10.88 0.4371
mode 33 11.76 0.3732
mode 34 12.23 0.3559
mode 35 12.44 0.3228
mode 36 13.26 0.3692
mode 37 14.27 0.7104
mode 38 14.47 0.5004
mode 39 14.58 0.5128
mode 40 14.91 0.4776
mode 41 15.57 0.3488
mode 42 15.67 0.3451
mode 43 16.50 0.3304
mode 44 16.71 0.3330
mode 45 17.41 0.4274
mode 46 17.48 0.4030
mode 47 17.87 0.4502
mode 48 18.04 0.4698
mode 49 19.31 0.2074
mode 50 19.48 0.1954
mode 51 19.84 0.1682
mode 52 19.93 0.1447
mode 53 20.77 0.4717
mode 54 20.96 0.5272
mode 55 21.17 0.4459
mode 56 21.33 0.4410
mode 57 21.64 0.3526
mode 58 21.80 0.4007
mode 59 22.81 0.1947
mode 60 23.50 0.3842
mode 61 23.56 0.3380
mode 62 23.71 0.4609
mode 63 24.22 0.3847
mode 64 24.36 0.3111
mode 65 24.68 0.1584
mode 66 25.54 0.3689
mode 67 25.93 0.2074
mode 68 26.25 0.3368
mode 69 26.45 0.2090
mode 70 26.47 0.3281
mode 71 26.80 0.3040
mode 72 26.87 0.4965
mode 73 27.04 0.3825
mode 74 27.35 0.3560
mode 75 27.53 0.3424
mode 76 27.71 0.1303
mode 77 27.77 0.1389
mode 78 27.99 0.3536
mode 79 28.09 0.1112
mode 80 28.21 0.1156
mode 81 28.32 0.2722
mode 82 28.46 0.3291
mode 83 28.61 0.2104
mode 84 28.84 0.2406
mode 85 28.90 0.3337
mode 86 29.04 0.0288
mode 87 29.32 0.0517
mode 88 29.50 0.0200
mode 89 29.58 0.0627
mode 90 29.72 0.0992
mode 91 29.89 0.1423
mode 92 30.06 0.1673
mode 93 30.22 0.2057
mode 94 30.44 0.4345
mode 95 30.51 0.2936
mode 96 30.61 0.4824
mode 97 30.70 0.4551
mode 98 31.16 0.3589
mode 99 31.31 0.1794
mode 100 31.71 0.1846
mode 101 31.74 0.2627
mode 102 31.83 0.3670
mode 103 31.89 0.4389
mode 104 31.92 0.3042
mode 105 32.06 0.4257
mode 106 32.23 0.4187

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.