CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  SIGNALING PROTEIN 20-OCT-09 3KB3  ***

Normal Mode Analysis for ID 2602031626281395717

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 1 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.1180
mode 8 1.15 0.2796
mode 9 1.23 0.1697
mode 10 1.27 0.0263
mode 11 1.40 0.1921
mode 12 1.55 0.3955
mode 13 1.90 0.3293
mode 14 1.95 0.3738
mode 15 1.97 0.2272
mode 16 2.05 0.0561
mode 17 2.09 0.0240
mode 18 2.16 0.1715
mode 19 2.22 0.0594
mode 20 2.33 0.3360
mode 21 2.40 0.2486
mode 22 2.50 0.3981
mode 23 2.52 0.2522
mode 24 2.58 0.3209
mode 25 2.65 0.4286
mode 26 2.74 0.6051
mode 27 2.82 0.4855
mode 28 2.89 0.2892
mode 29 2.97 0.4316
mode 30 3.06 0.1759
mode 31 3.14 0.4503
mode 32 3.15 0.3024
mode 33 3.28 0.4376
mode 34 3.32 0.1897
mode 35 3.35 0.4068
mode 36 3.36 0.4853
mode 37 3.49 0.3498
mode 38 3.50 0.3142
mode 39 3.58 0.5075
mode 40 3.65 0.3831
mode 41 3.67 0.4112
mode 42 3.72 0.4841
mode 43 3.75 0.3144
mode 44 3.79 0.4822
mode 45 3.83 0.2004
mode 46 3.87 0.3992
mode 47 3.96 0.4849
mode 48 3.98 0.4661
mode 49 4.04 0.3666
mode 50 4.07 0.2258
mode 51 4.12 0.4512
mode 52 4.20 0.1608
mode 53 4.27 0.4031
mode 54 4.29 0.4645
mode 55 4.32 0.3491
mode 56 4.32 0.2914
mode 57 4.42 0.3635
mode 58 4.46 0.4366
mode 59 4.50 0.4731
mode 60 4.51 0.2954
mode 61 4.60 0.4363
mode 62 4.65 0.4375
mode 63 4.70 0.3808
mode 64 4.71 0.4182
mode 65 4.74 0.4151
mode 66 4.76 0.3711
mode 67 4.82 0.3702
mode 68 4.86 0.3374
mode 69 4.88 0.1467
mode 70 4.92 0.3611
mode 71 4.93 0.3103
mode 72 4.97 0.3546
mode 73 5.01 0.1351
mode 74 5.03 0.4920
mode 75 5.04 0.3963
mode 76 5.09 0.3894
mode 77 5.14 0.3692
mode 78 5.16 0.4239
mode 79 5.19 0.3171
mode 80 5.20 0.4141
mode 81 5.21 0.4602
mode 82 5.28 0.4489
mode 83 5.29 0.3734
mode 84 5.36 0.4225
mode 85 5.36 0.2908
mode 86 5.39 0.3061
mode 87 5.42 0.5289
mode 88 5.46 0.3715
mode 89 5.49 0.4218
mode 90 5.52 0.5301
mode 91 5.53 0.3170
mode 92 5.57 0.4160
mode 93 5.59 0.3564
mode 94 5.61 0.5234
mode 95 5.65 0.3620
mode 96 5.67 0.3172
mode 97 5.72 0.3588
mode 98 5.74 0.3540
mode 99 5.79 0.3408
mode 100 5.80 0.4335
mode 101 5.85 0.0452
mode 102 5.85 0.3666
mode 103 5.86 0.4401
mode 104 5.88 0.4018
mode 105 5.89 0.3258
mode 106 5.94 0.3707

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.