CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  LIPID BINDING PROTEIN 11-OCT-10 3P6D  ***

Normal Mode Analysis for ID 2602031635481411610

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 5 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0247
mode 8 1.71 0.0167
mode 9 1.96 0.0233
mode 10 4.24 0.0255
mode 11 4.61 0.0164
mode 12 6.42 0.0323
mode 13 7.66 0.0206
mode 14 9.22 0.0113
mode 15 10.55 0.1902
mode 16 11.29 0.1274
mode 17 11.59 0.1947
mode 18 12.69 0.3860
mode 19 13.21 0.3139
mode 20 13.36 0.1640
mode 21 14.23 0.3469
mode 22 14.40 0.0474
mode 23 14.98 0.0796
mode 24 15.32 0.3397
mode 25 15.48 0.0510
mode 26 15.73 0.4677
mode 27 15.88 0.5375
mode 28 16.43 0.3038
mode 29 16.69 0.2063
mode 30 17.00 0.6559
mode 31 17.01 0.6097
mode 32 17.67 0.5470
mode 33 18.05 0.3913
mode 34 18.47 0.4627
mode 35 18.89 0.3825
mode 36 18.97 0.4282
mode 37 19.40 0.0256
mode 38 20.12 0.3573
mode 39 20.41 0.2817
mode 40 20.78 0.3797
mode 41 21.23 0.2708
mode 42 21.41 0.0331
mode 43 21.97 0.2490
mode 44 22.29 0.0407
mode 45 22.47 0.2045
mode 46 22.61 0.4059
mode 47 22.72 0.2798
mode 48 22.90 0.2521
mode 49 23.03 0.1316
mode 50 23.37 0.2852
mode 51 23.60 0.3091
mode 52 23.89 0.2946
mode 53 24.24 0.4549
mode 54 24.43 0.2061
mode 55 24.57 0.2410
mode 56 24.83 0.4456
mode 57 25.17 0.3268
mode 58 25.26 0.1102
mode 59 25.29 0.3489
mode 60 25.56 0.5288
mode 61 25.78 0.3796
mode 62 26.05 0.1148
mode 63 26.20 0.4079
mode 64 26.57 0.3092
mode 65 26.70 0.5263
mode 66 27.52 0.4948
mode 67 27.65 0.0586
mode 68 27.78 0.2420
mode 69 27.84 0.0442
mode 70 28.28 0.4393
mode 71 28.31 0.3858
mode 72 28.66 0.0196
mode 73 28.71 0.4407
mode 74 28.87 0.4132
mode 75 28.91 0.4138
mode 76 29.05 0.1238
mode 77 29.41 0.2766
mode 78 29.67 0.4020
mode 79 29.77 0.3538
mode 80 30.00 0.1646
mode 81 30.16 0.3238
mode 82 30.30 0.2101
mode 83 30.47 0.0330
mode 84 30.63 0.3769
mode 85 30.85 0.2847
mode 86 30.99 0.3580
mode 87 31.21 0.4456
mode 88 31.76 0.2866
mode 89 31.98 0.2731
mode 90 32.24 0.4416
mode 91 32.34 0.4136
mode 92 32.57 0.4229
mode 93 32.73 0.5558
mode 94 32.97 0.5139
mode 95 33.06 0.4932
mode 96 33.32 0.0389
mode 97 33.66 0.4216
mode 98 33.76 0.3346
mode 99 33.91 0.3394
mode 100 33.99 0.5396
mode 101 34.35 0.2232
mode 102 34.40 0.3082
mode 103 34.76 0.3336
mode 104 34.94 0.2456
mode 105 34.99 0.2840
mode 106 35.26 0.4532

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.