CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  TRANSPORT PROTEIN 17-DEC-20 7L2L  ***

Normal Mode Analysis for ID 2602061010332940591

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.3313
mode 8 1.10 0.4672
mode 9 1.10 0.4073
mode 10 1.14 0.3399
mode 11 1.18 0.5501
mode 12 1.44 0.4549
mode 13 1.94 0.4111
mode 14 1.95 0.3953
mode 15 1.98 0.4565
mode 16 2.30 0.5865
mode 17 2.32 0.5708
mode 18 2.54 0.6797
mode 19 2.55 0.4715
mode 20 3.15 0.4306
mode 21 3.22 0.3743
mode 22 3.23 0.3769
mode 23 3.49 0.6073
mode 24 3.69 0.5774
mode 25 3.79 0.5134
mode 26 3.81 0.5139
mode 27 4.31 0.7102
mode 28 4.35 0.5269
mode 29 4.71 0.4198
mode 30 4.72 0.4097
mode 31 4.93 0.4769
mode 32 4.97 0.4458
mode 33 5.64 0.3252
mode 34 5.68 0.4634
mode 35 5.72 0.3843
mode 36 5.73 0.6798
mode 37 5.95 0.5160
mode 38 6.03 0.3386
mode 39 6.08 0.3284
mode 40 6.09 0.3802
mode 41 6.24 0.5126
mode 42 6.25 0.4127
mode 43 6.40 0.5392
mode 44 6.45 0.4206
mode 45 6.55 0.6192
mode 46 7.07 0.3758
mode 47 7.21 0.3736
mode 48 7.23 0.4107
mode 49 7.28 0.3612
mode 50 7.55 0.4399
mode 51 7.57 0.4471
mode 52 7.72 0.3562
mode 53 7.73 0.3815
mode 54 7.80 0.4686
mode 55 7.81 0.4757
mode 56 8.09 0.5810
mode 57 8.41 0.2699
mode 58 8.48 0.2776
mode 59 8.54 0.2467
mode 60 8.62 0.2310
mode 61 8.77 0.0025
mode 62 8.93 0.3416
mode 63 9.07 0.2800
mode 64 9.12 0.0786
mode 65 9.17 0.2173
mode 66 9.29 0.0859
mode 67 9.38 0.4025
mode 68 9.39 0.3716
mode 69 9.49 0.2522
mode 70 9.63 0.1547
mode 71 9.68 0.1169
mode 72 9.73 0.1407
mode 73 9.81 0.2661
mode 74 9.87 0.2430
mode 75 9.87 0.1437
mode 76 10.01 0.2543
mode 77 10.03 0.2982
mode 78 10.08 0.2675
mode 79 10.14 0.3361
mode 80 10.19 0.2591
mode 81 10.24 0.2476
mode 82 10.28 0.2251
mode 83 10.59 0.3882
mode 84 10.62 0.3188
mode 85 10.66 0.3785
mode 86 10.77 0.2428
mode 87 10.83 0.4874
mode 88 10.90 0.3516
mode 89 11.00 0.3950
mode 90 11.11 0.4482
mode 91 11.19 0.4489
mode 92 11.26 0.4709
mode 93 11.28 0.3666
mode 94 11.33 0.4069
mode 95 11.36 0.2544
mode 96 11.41 0.2863
mode 97 11.46 0.3465
mode 98 11.57 0.1536
mode 99 11.63 0.4369
mode 100 11.67 0.3714
mode 101 11.73 0.1858
mode 102 11.90 0.3494
mode 103 11.97 0.3258
mode 104 11.98 0.4109
mode 105 12.02 0.4198
mode 106 12.10 0.2307

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.