CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  HIVp  ***

Normal Mode Analysis for ID 2602061609383025684

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.6371
mode 8 1.04 0.6153
mode 9 1.38 0.6706
mode 10 1.57 0.5962
mode 11 1.76 0.5538
mode 12 1.82 0.6483
mode 13 1.98 0.6828
mode 14 2.03 0.6270
mode 15 2.18 0.7446
mode 16 2.34 0.3715
mode 17 2.41 0.2306
mode 18 2.51 0.4486
mode 19 2.54 0.3739
mode 20 2.60 0.3817
mode 21 2.69 0.4666
mode 22 2.75 0.3785
mode 23 2.79 0.4265
mode 24 2.82 0.1655
mode 25 2.88 0.3992
mode 26 2.91 0.2123
mode 27 2.95 0.4695
mode 28 3.02 0.3119
mode 29 3.12 0.5282
mode 30 3.15 0.4292
mode 31 3.20 0.3704
mode 32 3.24 0.2350
mode 33 3.28 0.3491
mode 34 3.32 0.4935
mode 35 3.36 0.3880
mode 36 3.39 0.4997
mode 37 3.46 0.4382
mode 38 3.48 0.2688
mode 39 3.50 0.1955
mode 40 3.57 0.4637
mode 41 3.60 0.3165
mode 42 3.61 0.3975
mode 43 3.63 0.1802
mode 44 3.68 0.5212
mode 45 3.71 0.3111
mode 46 3.72 0.1432
mode 47 3.76 0.2908
mode 48 3.78 0.3396
mode 49 3.80 0.3129
mode 50 3.83 0.3576
mode 51 3.86 0.2827
mode 52 3.90 0.3751
mode 53 3.92 0.3303
mode 54 3.94 0.4563
mode 55 3.99 0.4890
mode 56 4.03 0.3955
mode 57 4.06 0.4515
mode 58 4.09 0.4184
mode 59 4.13 0.4182
mode 60 4.14 0.2733
mode 61 4.16 0.3084
mode 62 4.20 0.4958
mode 63 4.22 0.4928
mode 64 4.25 0.4482
mode 65 4.26 0.4744
mode 66 4.30 0.1489
mode 67 4.32 0.3530
mode 68 4.33 0.3221
mode 69 4.39 0.3872
mode 70 4.40 0.3606
mode 71 4.43 0.3936
mode 72 4.46 0.3140
mode 73 4.47 0.3040
mode 74 4.50 0.4915
mode 75 4.54 0.4883
mode 76 4.55 0.4603
mode 77 4.58 0.3979
mode 78 4.67 0.4782
mode 79 4.67 0.4748
mode 80 4.69 0.4057
mode 81 4.73 0.5068
mode 82 4.74 0.3595
mode 83 4.79 0.4215
mode 84 4.80 0.4676
mode 85 4.84 0.4708
mode 86 4.87 0.3961
mode 87 4.88 0.3745
mode 88 4.92 0.4136
mode 89 4.94 0.3882
mode 90 4.95 0.4974
mode 91 4.98 0.0457
mode 92 4.99 0.2464
mode 93 5.00 0.4189
mode 94 5.02 0.4699
mode 95 5.04 0.3902
mode 96 5.05 0.4543
mode 97 5.08 0.3932
mode 98 5.11 0.3597
mode 99 5.13 0.3850
mode 100 5.14 0.3776
mode 101 5.18 0.4034
mode 102 5.20 0.3941
mode 103 5.22 0.3651
mode 104 5.23 0.2293
mode 105 5.25 0.0892
mode 106 5.28 0.4467

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.