CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  HIVp_CA  ***

CA distance fluctuations for 2602061614463035534

---  normal mode 8  ---

This matrix displays the maximum distance fluctuations between all pairs of CA atoms and between the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Distance increases are plotted in blue and decreases in red for the strongest 10% of the residue pair distance changes. Every pixel corresponds to a single residue. Grey lines are drawn every 10 residues, yellow lines every 100 residues (counting from the upper left corner).

The following table indicates for every residue the two corresponding residues with the strongest CA distance fluctuations.

[HELP on distance fluctuations]

GD ok
largest increasereflargest decrease
ILE 47 0.38 PRO 1 -1.14 VAL 11
ILE 47 0.48 GLN 2 -0.80 VAL 11
ILE 47 0.55 ILE 3 -0.73 LEU 10
ILE 47 0.59 THR 4 -0.64 MET 36
ILE 47 0.61 LEU 5 -0.64 VAL 82
ILE 47 0.50 TRP 6 -0.62 VAL 82
LYS 43 0.46 LYS 7 -0.80 VAL 82
LYS 43 0.47 ARG 8 -1.03 VAL 82
ILE 47 0.52 PRO 9 -0.78 VAL 82
LYS 45 0.65 LEU 10 -0.84 PRO 1
LYS 45 0.56 VAL 11 -1.14 PRO 1
LYS 45 0.57 THR 12 -0.98 PRO 1
LYS 45 0.47 ILE 13 -0.72 GLY 40
ASN 83 0.58 ARG 14 -0.72 GLY 40
ASN 83 1.02 ILE 15 -0.97 GLY 40
LEU 33 1.14 GLY 16 -0.70 GLY 40
VAL 82 0.75 GLY 17 -0.49 PRO 1
VAL 82 0.79 GLN 18 -0.66 GLY 40
LYS 45 0.57 LEU 19 -0.83 ASN 37
LYS 45 0.57 LEU 19 -0.83 ASN 37
LYS 45 0.65 LYS 20 -1.01 LEU 38
LYS 45 0.68 GLU 21 -1.06 MET 36
LYS 45 0.69 GLU 21 -1.07 MET 36
GLY 48 0.55 ALA 22 -0.78 MET 36
GLY 49 0.67 LEU 23 -0.72 LEU 97
ILE 47 0.65 LEU 24 -0.87 LEU 97
ILE 47 0.84 ASP 25 -0.75 PRO 81
ILE 47 1.10 THR 26 -0.86 PRO 81
ILE 47 1.27 GLY 27 -1.03 PRO 81
ILE 47 1.09 ALA 28 -1.23 PRO 81
ILE 47 1.08 ASP 29 -1.40 PRO 81
LYS 45 0.65 ASP 30 -1.10 PRO 81
GLY 16 0.60 THR 31 -0.86 PRO 81
GLY 16 0.81 VAL 32 -0.65 PRO 81
GLY 16 1.14 LEU 33 -0.60 ALA 22
GLY 16 1.12 GLU 34 -0.74 ARG 8
GLY 16 0.70 GLU 35 -0.65 GLU 21
GLY 16 0.48 MET 36 -1.07 GLU 21
GLY 40 0.51 ASN 37 -0.98 LYS 20
GLY 16 0.38 LEU 38 -1.01 LYS 20
TYR 59 0.63 PRO 39 -0.55 LYS 20
ASN 37 0.51 GLY 40 -0.97 ILE 15
GLY 16 0.45 LYS 41 -0.58 LYS 20
GLY 16 0.54 TRP 42 -0.46 LYS 20
LYS 7 0.78 LYS 43 -0.30 LYS 20
LEU 10 0.94 PRO 44 -0.24 LYS 20
LYS 7 1.21 LYS 45 -0.20 LYS 43
LEU 10 1.43 MET 46 -0.15 LYS 43
ARG 8 1.57 ILE 47 -0.28 GLN 58
ARG 8 1.57 ILE 47 -0.27 GLN 58
LEU 23 1.73 GLY 48 -0.36 GLN 58
ILE 84 1.51 GLY 49 -0.58 LEU 76
ILE 84 1.47 ILE 50 -0.51 LEU 76
GLY 16 1.10 GLY 51 -0.22 LEU 76
ALA 22 1.40 GLY 52 -0.24 LEU 76
LEU 10 1.44 PHE 53 -0.19 GLN 58
LEU 10 1.12 ILE 54 -0.13 GLY 49
LEU 10 1.04 LYS 55 -0.12 LYS 20
LEU 10 0.83 VAL 56 -0.27 GLY 49
LEU 10 0.65 ARG 57 -0.36 LYS 20
TRP 6 0.74 GLN 58 -0.49 GLY 49
PRO 39 0.63 TYR 59 -0.46 PRO 81
PRO 39 0.57 ASP 60 -0.62 PRO 81
PRO 39 0.48 GLN 61 -0.68 PRO 81
PRO 39 0.39 ILE 62 -0.59 PRO 81
ASN 83 0.35 PRO 63 -0.63 GLY 40
ASN 83 0.42 VAL 64 -0.71 GLY 40
LYS 45 0.36 GLU 65 -0.63 GLY 40
LYS 45 0.38 ILE 66 -0.57 GLY 40
LYS 43 0.42 CYS 67 -0.75 PRO 1
LYS 43 0.37 GLY 68 -0.54 GLY 40
PRO 9 0.38 HIS 69 -0.51 PRO 81
PRO 9 0.32 LYS 70 -0.54 PRO 81
ILE 47 0.26 ALA 71 -0.65 PRO 81
PRO 39 0.27 ILE 72 -0.69 PRO 81
PRO 39 0.36 GLY 73 -0.79 PRO 81
TRP 6 0.49 THR 74 -0.76 PRO 81
GLY 16 0.54 VAL 75 -0.69 PRO 81
GLY 16 0.63 LEU 76 -0.58 GLY 49
GLY 16 0.70 VAL 77 -0.47 ARG 8
GLY 16 0.64 GLY 78 -0.46 ARG 8
GLY 16 0.71 PRO 79 -0.52 ARG 8
GLY 16 0.85 THR 80 -0.51 ARG 8
GLY 16 0.96 PRO 81 -0.83 ARG 8
GLY 16 1.01 VAL 82 -1.02 ARG 8
GLY 16 1.01 VAL 82 -1.03 ARG 8
GLY 16 1.02 ASN 83 -0.73 ARG 8
GLY 16 0.68 ILE 84 -0.64 PRO 81
ILE 47 0.53 ILE 85 -0.76 PRO 81
ILE 47 0.75 GLY 86 -1.00 PRO 81
ILE 47 0.84 ARG 87 -1.07 PRO 81
LYS 45 0.63 ASN 88 -1.00 PRO 81
ILE 47 0.50 LEU 89 -0.84 PRO 81
ILE 47 0.64 LEU 90 -0.82 PRO 81
ILE 47 0.63 THR 91 -0.88 PRO 81
ILE 47 0.46 GLN 92 -0.76 PRO 81
ILE 47 0.46 ILE 93 -0.65 PRO 81
ILE 47 0.54 GLY 94 -0.73 PRO 81
ILE 47 0.64 CYS 95 -0.76 PRO 81
ILE 47 0.63 CYS 95 -0.75 PRO 81
ILE 47 0.74 THR 96 -0.75 PRO 81
ILE 47 0.83 LEU 97 -0.89 LEU 24
ILE 47 0.76 ASN 98 -0.72 LEU 24
ILE 47 0.75 PHE 99 -0.76 CYS 67
ILE 47 0.82 PRO 1 -0.86 PRO 39
ILE 47 0.86 GLN 2 -0.83 PRO 39
ILE 47 1.02 ILE 3 -0.87 PRO 39
ILE 47 1.00 THR 4 -0.84 PRO 39
ILE 47 1.06 LEU 5 -0.84 PRO 81
LYS 45 1.07 TRP 6 -0.81 LEU 38
ILE 47 1.24 LYS 7 -0.93 VAL 82
ILE 47 1.57 ARG 8 -1.19 VAL 82
ILE 47 1.42 PRO 9 -0.86 VAL 82
GLY 48 1.64 LEU 10 -0.97 PRO 39
GLY 48 1.34 VAL 11 -0.98 PRO 39
PHE 53 1.18 THR 12 -1.06 PRO 39
GLY 48 1.14 ILE 13 -0.94 PRO 39
GLY 52 1.10 ARG 14 -0.92 PRO 39
GLY 52 1.22 ILE 15 -0.80 PRO 39
THR 80 1.58 GLY 16 -0.56 PRO 39
PRO 81 1.20 GLY 17 -0.76 PRO 39
PRO 81 1.15 GLN 18 -1.12 PRO 39
PHE 53 1.08 LEU 19 -1.27 PRO 39
PHE 53 1.22 LYS 20 -1.21 PRO 39
PHE 53 1.41 GLU 21 -1.17 PRO 39
GLY 48 1.47 ALA 22 -0.91 LEU 38
GLY 48 1.73 LEU 23 -0.76 LEU 38
GLY 48 1.42 LEU 24 -0.89 LEU 97
GLY 49 1.26 ASP 25 -0.56 LEU 97
ILE 47 0.91 THR 26 -0.53 LEU 97
GLY 49 0.79 GLY 27 -0.60 PRO 81
GLY 49 0.85 ALA 28 -0.51 PRO 81
ILE 50 0.58 ASP 29 -0.67 PRO 81
ILE 50 0.75 ASP 30 -0.47 PRO 81
ILE 50 1.05 THR 31 -0.34 PRO 39
ILE 50 1.12 VAL 32 -0.40 ARG 8
ILE 50 1.11 VAL 32 -0.39 ARG 8
GLY 16 1.02 LEU 33 -0.56 LEU 38
GLY 16 1.45 GLU 34 -0.74 ARG 8
GLY 16 1.19 GLU 35 -0.63 ASP 29
ILE 62 0.93 MET 36 -0.57 LYS 7
GLY 17 0.59 ASN 37 -0.71 LYS 41
PRO 44 0.24 LEU 38 -1.08 GLU 21
PRO 44 0.30 PRO 39 -1.27 LEU 19
GLN 18 0.21 GLY 40 -0.88 LYS 20
TRP 6 0.44 LYS 41 -0.71 ASN 37
GLU 21 0.46 TRP 42 -0.52 ASN 37
GLU 21 0.64 LYS 43 -0.35 ASN 37
GLU 21 0.61 PRO 44 -0.29 ASN 37
GLU 21 0.69 LYS 45 -0.39 ASP 60
GLU 21 0.66 MET 46 -0.40 ASP 60
GLU 21 0.65 MET 46 -0.39 ASP 60
GLU 21 0.64 ILE 47 -0.30 ASP 60
GLY 16 0.72 GLY 48 -0.28 PRO 79
GLY 16 0.71 GLY 49 -0.44 PRO 79
LEU 23 0.89 ILE 50 -0.24 LEU 76
GLY 16 1.03 GLY 51 -0.12 LEU 76
GLY 16 0.90 GLY 52 -0.16 ASP 60
GLY 16 0.85 PHE 53 -0.18 ASP 60
GLY 16 0.96 ILE 54 -0.25 ASP 29
GLY 16 0.79 LYS 55 -0.27 LYS 41
GLY 16 0.72 VAL 56 -0.31 ASP 29
GLY 16 0.48 ARG 57 -0.40 ASN 37
LEU 10 0.48 GLN 58 -0.32 ASN 37
MET 36 0.51 TYR 59 -0.44 LYS 20
MET 36 0.61 ASP 60 -0.40 MET 46
MET 36 0.76 GLN 61 -0.34 PRO 81
MET 36 0.93 ILE 62 -0.31 LYS 20
MET 36 0.79 PRO 63 -0.38 PRO 39
GLY 48 0.98 VAL 64 -0.60 PRO 39
GLY 48 0.98 GLU 65 -0.66 PRO 39
GLY 48 0.98 GLU 65 -0.67 PRO 39
GLY 48 1.08 ILE 66 -0.74 PRO 39
GLY 48 1.00 CYS 67 -0.77 PRO 39
GLY 48 0.90 GLY 68 -0.70 PRO 39
GLY 48 0.91 HIS 69 -0.58 PRO 39
GLY 48 0.85 LYS 70 -0.49 PRO 39
GLY 48 0.80 ALA 71 -0.41 PRO 39
GLY 48 0.65 ILE 72 -0.30 PRO 81
MET 36 0.56 GLY 73 -0.39 PRO 81
MET 36 0.49 THR 74 -0.35 PRO 81
ILE 50 0.70 VAL 75 -0.40 LYS 20
ILE 50 0.61 LEU 76 -0.33 ASN 37
GLY 16 0.84 VAL 77 -0.47 ARG 8
GLY 16 1.09 GLY 78 -0.59 ASP 29
GLY 16 1.38 PRO 79 -0.86 ASP 29
GLY 16 1.58 THR 80 -1.01 ASP 29
GLY 16 1.57 PRO 81 -1.40 ASP 29
GLY 52 1.32 VAL 82 -1.18 ARG 8
GLY 52 1.33 VAL 82 -1.19 ARG 8
GLY 52 1.22 ASN 83 -0.77 LEU 38
GLY 49 1.51 ILE 84 -0.63 LEU 38
GLY 49 1.30 ILE 85 -0.56 PRO 39
GLY 49 1.05 GLY 86 -0.38 PRO 39
GLY 49 0.79 ARG 87 -0.52 VAL 82
GLY 49 0.68 ASN 88 -0.50 PRO 81
GLY 49 0.83 LEU 89 -0.39 PRO 39
GLY 48 0.87 LEU 90 -0.47 PRO 39
ILE 47 0.68 THR 91 -0.50 VAL 82
GLY 48 0.72 GLN 92 -0.39 VAL 82
GLY 48 0.87 ILE 93 -0.47 PRO 39
ILE 47 0.73 GLY 94 -0.46 MET 36
ILE 47 0.79 CYS 95 -0.55 PRO 39
ILE 47 0.65 THR 96 -0.58 VAL 82
ILE 47 0.63 LEU 97 -0.87 LEU 24
ILE 47 0.55 ASN 98 -0.80 VAL 11

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.