CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  HIVp_CA  ***

CA distance fluctuations for 2602061615123036985

---  normal mode 9  ---

This matrix displays the maximum distance fluctuations between all pairs of CA atoms and between the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Distance increases are plotted in blue and decreases in red for the strongest 10% of the residue pair distance changes. Every pixel corresponds to a single residue. Grey lines are drawn every 10 residues, yellow lines every 100 residues (counting from the upper left corner).

The following table indicates for every residue the two corresponding residues with the strongest CA distance fluctuations.

[HELP on distance fluctuations]

GD ok
largest increasereflargest decrease
LYS 45 0.57 PRO 1 -0.85 GLY 68
LYS 45 0.57 GLN 2 -0.68 CYS 67
LYS 45 0.68 ILE 3 -0.86 CYS 67
LYS 45 0.74 THR 4 -0.68 CYS 67
LYS 45 0.84 LEU 5 -0.64 PRO 81
LYS 45 1.06 TRP 6 -0.57 LEU 38
LYS 45 0.97 LYS 7 -0.63 LEU 38
LYS 45 0.88 ARG 8 -0.64 VAL 82
LYS 45 0.70 PRO 9 -0.59 LEU 38
ILE 47 0.73 LEU 10 -0.69 LEU 38
ILE 47 0.66 VAL 11 -0.63 LEU 38
GLY 49 0.73 THR 12 -0.67 LEU 38
GLU 34 0.93 ILE 13 -0.56 LEU 38
GLU 34 1.53 ARG 14 -0.35 ILE 3
LEU 33 1.55 ILE 15 -0.27 LEU 38
VAL 77 1.61 GLY 16 -0.20 PRO 1
GLU 35 1.57 GLY 17 -0.26 PRO 1
GLY 78 1.66 GLN 18 -0.25 LEU 38
GLU 34 1.48 LEU 19 -0.66 LEU 38
GLU 34 1.49 LEU 19 -0.66 LEU 38
VAL 82 1.30 LYS 20 -0.98 LEU 38
GLY 49 0.95 GLU 21 -0.94 LEU 38
GLY 49 0.96 GLU 21 -0.94 LEU 38
PRO 81 0.86 ALA 22 -0.74 LEU 38
THR 80 0.91 LEU 23 -0.57 LEU 38
PRO 81 0.75 LEU 24 -0.42 ILE 3
PRO 81 0.80 ASP 25 -0.68 PRO 81
PRO 39 0.59 THR 26 -0.82 PRO 81
LEU 38 0.64 GLY 27 -1.06 PRO 81
PRO 81 0.85 ALA 28 -0.97 THR 80
VAL 82 0.71 ASP 29 -1.44 ILE 47
PRO 81 0.89 ASP 30 -1.07 ILE 47
PRO 81 0.94 THR 31 -0.61 ILE 47
PRO 81 1.10 VAL 32 -0.36 GLY 27
ILE 15 1.55 LEU 33 -0.54 ASP 29
ARG 14 1.53 GLU 34 -0.77 ASP 29
GLY 17 1.57 GLU 35 -0.65 ASP 29
GLY 17 1.14 MET 36 -0.52 ASP 29
GLY 17 0.97 ASN 37 -0.62 TRP 42
PRO 44 0.65 LEU 38 -0.98 LYS 20
PRO 81 0.46 PRO 39 -0.61 LYS 20
GLN 61 0.46 GLY 40 -0.46 GLU 21
PRO 81 0.46 LYS 41 -0.54 ASN 37
PRO 81 0.54 TRP 42 -0.62 ASN 37
PRO 81 0.66 LYS 43 -0.44 ASN 37
GLY 16 0.96 PRO 44 -0.41 THR 74
GLU 35 0.72 LYS 45 -0.76 ASN 88
GLU 35 0.77 MET 46 -1.05 ASP 29
PRO 79 0.87 ILE 47 -1.44 ASP 29
PRO 79 0.88 ILE 47 -1.44 ASP 29
PRO 79 1.26 GLY 48 -1.15 LYS 7
GLN 18 1.00 GLY 49 -1.07 ARG 8
LYS 20 0.94 ILE 50 -0.77 VAL 82
GLN 18 0.84 GLY 51 -0.70 ARG 8
PRO 79 0.93 GLY 52 -0.85 LYS 7
PRO 79 0.94 PHE 53 -0.91 LYS 7
GLN 18 1.07 ILE 54 -0.69 LYS 7
GLN 18 1.14 LYS 55 -0.63 ASP 29
GLY 16 1.34 VAL 56 -0.42 ASP 29
GLY 16 1.25 ARG 57 -0.54 ASN 37
PRO 81 0.78 GLN 58 -0.51 ASN 37
PRO 81 0.70 TYR 59 -0.46 GLU 21
PRO 81 0.69 ASP 60 -0.39 GLU 21
PRO 81 0.58 GLN 61 -0.48 LYS 45
MET 36 0.74 ILE 62 -0.47 GLU 21
MET 36 1.07 PRO 63 -0.29 ILE 3
LEU 33 0.99 VAL 64 -0.30 ILE 3
MET 36 0.98 GLU 65 -0.47 ILE 3
MET 36 0.64 ILE 66 -0.59 ILE 3
MET 36 0.58 CYS 67 -0.86 ILE 3
MET 36 0.80 GLY 68 -0.85 PRO 1
MET 36 0.74 HIS 69 -0.76 PRO 1
MET 36 0.87 LYS 70 -0.47 PRO 1
MET 36 0.74 ALA 71 -0.42 MET 46
MET 36 0.74 ILE 72 -0.43 LYS 45
PRO 81 0.61 GLY 73 -0.62 LYS 45
PRO 81 0.71 THR 74 -0.70 LYS 45
PRO 81 0.82 VAL 75 -0.48 ALA 22
GLY 16 0.99 LEU 76 -0.36 ASN 37
GLY 16 1.61 VAL 77 -0.50 ASP 29
GLN 18 1.66 GLY 78 -0.65 ASP 29
GLN 18 1.52 PRO 79 -0.94 ALA 28
GLN 18 1.27 THR 80 -1.14 ALA 28
GLN 18 1.03 PRO 81 -1.48 ALA 28
LYS 20 1.28 VAL 82 -1.20 ASP 29
LYS 20 1.30 VAL 82 -1.20 ASP 29
LYS 20 0.94 ASN 83 -0.64 ASP 29
PRO 81 1.11 ILE 84 -0.43 LEU 38
PRO 81 0.89 ILE 85 -0.50 ILE 47
PRO 81 0.81 GLY 86 -0.80 ILE 47
PRO 39 0.61 ARG 87 -0.99 ILE 47
PRO 39 0.59 ASN 88 -0.95 ILE 47
PRO 81 0.61 LEU 89 -0.67 ILE 47
PRO 39 0.52 LEU 90 -0.69 ILE 47
PRO 39 0.58 THR 91 -0.75 ILE 47
PRO 39 0.53 GLN 92 -0.64 ILE 47
MET 36 0.51 ILE 93 -0.52 ILE 47
PRO 39 0.53 GLY 94 -0.58 ILE 47
PRO 39 0.54 CYS 95 -0.60 ILE 47
PRO 39 0.54 CYS 95 -0.59 ILE 47
PRO 39 0.58 THR 96 -0.65 ILE 47
PRO 39 0.60 LEU 97 -0.73 PRO 81
PRO 39 0.56 ASN 98 -0.77 VAL 11
PRO 39 0.55 PHE 99 -1.07 VAL 11
PRO 39 0.64 PRO 1 -0.90 LEU 10
PRO 39 0.66 GLN 2 -0.69 LEU 10
PRO 39 0.74 ILE 3 -0.66 GLY 48
PRO 39 0.70 THR 4 -0.74 GLY 48
PRO 39 0.67 LEU 5 -0.86 ILE 47
PRO 39 0.66 TRP 6 -0.98 GLY 48
PRO 39 0.69 LYS 7 -1.15 GLY 48
PRO 39 0.70 ARG 8 -1.07 GLY 49
PRO 39 0.78 PRO 9 -0.85 PRO 81
PRO 39 0.85 LEU 10 -0.90 PRO 1
PRO 39 1.02 VAL 11 -1.07 PHE 99
PRO 39 1.19 THR 12 -0.86 PHE 99
PRO 39 1.33 ILE 13 -0.85 PRO 81
PRO 39 1.72 ARG 14 -1.10 MET 36
PRO 39 1.48 ILE 15 -1.10 VAL 77
PRO 39 1.06 GLY 16 -1.34 VAL 77
PRO 39 1.29 GLY 17 -1.25 MET 36
PRO 39 1.32 GLN 18 -1.34 GLU 35
PRO 39 1.27 LEU 19 -1.11 MET 36
LEU 38 1.43 LYS 20 -0.96 GLU 34
LEU 38 1.15 GLU 21 -0.72 PHE 99
LEU 38 0.98 ALA 22 -0.90 PRO 81
PRO 39 0.76 LEU 23 -1.03 PRO 81
PRO 39 0.79 LEU 24 -1.06 PRO 81
PRO 39 0.62 ASP 25 -1.21 PRO 81
LYS 45 0.61 THR 26 -0.99 PRO 81
THR 80 0.79 GLY 27 -1.05 PRO 81
LYS 45 0.71 ALA 28 -1.48 PRO 81
LYS 45 0.95 ASP 29 -1.22 PRO 81
LYS 45 0.74 ASP 30 -1.31 PRO 81
PRO 39 0.53 THR 31 -1.29 PRO 81
LEU 38 0.48 VAL 32 -1.16 PRO 81
LEU 38 0.48 VAL 32 -1.16 PRO 81
LEU 38 0.63 LEU 33 -0.98 ILE 15
GLY 16 0.67 GLU 34 -1.18 GLN 18
GLY 48 0.87 GLU 35 -1.34 GLN 18
LYS 41 0.68 MET 36 -1.25 GLY 17
VAL 77 0.76 ASN 37 -0.81 GLY 17
LYS 20 1.43 LEU 38 -0.57 TRP 42
ARG 14 1.72 PRO 39 -0.53 PRO 44
LYS 20 0.67 GLY 40 -0.38 PRO 81
ASN 37 0.70 LYS 41 -0.56 GLN 61
ASN 37 0.61 TRP 42 -0.75 GLY 16
TRP 6 0.53 LYS 43 -0.65 GLY 16
TRP 6 0.79 PRO 44 -0.69 GLY 16
TRP 6 1.06 LYS 45 -0.59 GLY 16
LYS 7 0.88 MET 46 -0.66 GLY 16
LYS 7 0.88 MET 46 -0.66 GLY 16
LEU 23 0.85 ILE 47 -0.92 GLY 16
LYS 20 0.91 GLY 48 -0.86 GLY 16
LYS 20 1.10 GLY 49 -1.00 ILE 84
GLN 18 1.04 ILE 50 -0.97 ARG 8
GLN 18 0.89 GLY 51 -0.86 ARG 8
GLN 18 0.82 GLY 52 -0.68 GLY 16
LYS 20 0.77 PHE 53 -0.71 GLY 16
LYS 20 0.77 ILE 54 -0.71 GLY 16
LYS 20 0.66 LYS 55 -0.72 GLY 16
ASP 29 0.73 VAL 56 -0.88 GLY 16
ASN 37 0.60 ARG 57 -1.16 GLY 16
ASN 37 0.47 GLN 58 -0.88 GLY 16
ASN 37 0.39 TYR 59 -0.76 PRO 81
ASN 37 0.27 ASP 60 -0.76 PRO 81
PRO 39 0.49 GLN 61 -0.73 PRO 81
PRO 39 0.71 ILE 62 -0.77 PRO 81
PRO 39 0.98 PRO 63 -0.82 MET 36
PRO 39 1.24 VAL 64 -0.87 PRO 81
PRO 39 1.33 GLU 65 -0.95 MET 36
PRO 39 1.36 GLU 65 -0.98 MET 36
PRO 39 1.18 ILE 66 -0.79 PRO 81
PRO 39 1.17 CYS 67 -0.75 MET 36
PRO 39 1.17 GLY 68 -0.94 MET 36
PRO 39 1.05 HIS 69 -0.82 MET 36
PRO 39 1.06 LYS 70 -0.87 MET 36
PRO 39 0.94 ALA 71 -0.75 PRO 81
PRO 39 0.80 ILE 72 -0.77 PRO 81
PRO 39 0.60 GLY 73 -0.84 PRO 81
PRO 39 0.44 THR 74 -0.91 PRO 81
PRO 39 0.48 VAL 75 -0.97 PRO 81
ASN 37 0.53 LEU 76 -0.98 PRO 81
ASN 37 0.76 VAL 77 -1.34 GLY 16
GLY 48 0.74 GLY 78 -0.97 GLY 16
GLY 48 1.26 PRO 79 -0.78 GLN 18
ILE 84 0.99 THR 80 -0.68 GLY 16
ILE 84 1.11 PRO 81 -0.58 GLN 18
ALA 28 0.84 VAL 82 -0.79 GLY 49
ALA 28 0.85 VAL 82 -0.80 GLY 49
LEU 38 0.81 ASN 83 -0.90 PRO 81
LEU 38 0.73 ILE 84 -1.30 PRO 81
PRO 39 0.73 ILE 85 -1.22 PRO 81
PRO 39 0.56 GLY 86 -1.32 PRO 81
LYS 45 0.73 ARG 87 -1.06 PRO 81
LYS 45 0.69 ASN 88 -0.99 PRO 81
PRO 39 0.65 LEU 89 -0.97 PRO 81
PRO 39 0.62 LEU 90 -0.93 PRO 81
LYS 45 0.62 THR 91 -0.81 PRO 81
PRO 39 0.67 GLN 92 -0.76 PRO 81
PRO 39 0.80 ILE 93 -0.73 PRO 81
PRO 39 0.67 GLY 94 -0.72 PRO 81
PRO 39 0.58 CYS 95 -0.81 PRO 81
LYS 45 0.51 THR 96 -0.70 PRO 81
LYS 45 0.55 LEU 97 -0.57 PRO 81
LYS 45 0.50 ASN 98 -0.50 ILE 47

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.