CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  HIVp-open  ***

CA strain for 2602061624473061020

---  normal mode 10  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
PRO 1001GLN 1002 0.0685
GLN 1002ILE 1003 0.0886
ILE 1003THR 1004 -0.2474
THR 1004LEU 1005 -0.0698
LEU 1005TRP 1006 -0.0035
TRP 1006LYS 1007 0.0806
LYS 1007LYS 1007 -0.0016
LYS 1007ARG 1008 0.0444
ARG 1008ARG 1008 -0.0078
ARG 1008PRO 1009 -0.0374
PRO 1009LEU 1010 0.0815
LEU 1010VAL 1011 -0.1153
VAL 1011THR 1012 -0.0479
THR 1012ILE 1013 -0.0228
ILE 1013LYS 1014 -0.0200
LYS 1014ILE 1015 -0.0208
ILE 1015GLY 1016 -0.0090
GLY 1016GLY 1017 -0.0023
GLY 1017GLN 1018 -0.0168
GLN 1018LEU 1019 -0.0053
LEU 1019LYS 1020 -0.0148
LYS 1020GLU 1021 0.0167
GLU 1021GLU 1021 0.0078
GLU 1021ALA 1022 -0.0035
ALA 1022LEU 1023 0.0021
LEU 1023LEU 1024 -0.0254
LEU 1024ASP 1025 0.0801
ASP 1025THR 1026 -0.1806
THR 1026GLY 1027 -0.1373
GLY 1027ALA 1028 -0.1058
ALA 1028ASP 1029 0.0236
ASP 1029ASP 1030 -0.0475
ASP 1030THR 1031 0.0122
THR 1031VAL 1032 0.0163
VAL 1032VAL 1032 -0.0111
VAL 1032LEU 1033 -0.0059
LEU 1033GLU 1034 -0.0289
GLU 1034GLU 1035 0.0619
GLU 1035MET 1036 -0.0357
MET 1036MET 1036 0.0136
MET 1036ASN 1037 0.0126
ASN 1037LEU 1038 0.0094
LEU 1038PRO 1039 0.0054
PRO 1039GLY 1040 0.0046
GLY 1040ARG 1041 0.0295
ARG 1041TRP 1042 0.0013
TRP 1042LYS 1043 0.0038
LYS 1043PRO 1044 -0.0655
PRO 1044LYS 1045 0.0016
LYS 1045MET 1046 0.0310
MET 1046ILE 1047 -0.0367
ILE 1047GLY 1048 0.1765
GLY 1048GLY 1049 0.0186
GLY 1049ILE 1050 0.0626
ILE 1050GLY 1051 0.0098
GLY 1051GLY 1052 -0.0527
GLY 1052PHE 1053 -0.1083
PHE 1053ILE 1054 -0.0749
ILE 1054LYS 1055 -0.2365
LYS 1055VAL 1056 -0.0580
VAL 1056ARG 1057 -0.0458
ARG 1057GLN 1058 -0.0274
GLN 1058TYR 1059 0.0126
TYR 1059ASP 1060 0.0093
ASP 1060GLN 1061 -0.0220
GLN 1061ILE 1062 0.0133
ILE 1062LEU 1063 -0.0436
LEU 1063ILE 1064 -0.0098
ILE 1064ILE 1064 0.0113
ILE 1064GLU 1065 -0.0112
GLU 1065ILE 1066 0.0076
ILE 1066CYS 1067 0.0261
CYS 1067GLY 1068 -0.0335
GLY 1068HIS 1069 0.0883
HIS 1069LYS 1070 -0.1771
LYS 1070ALA 1071 -0.0185
ALA 1071ILE 1072 -0.0453
ILE 1072GLY 1073 0.0046
GLY 1073THR 1074 0.0402
THR 1074VAL 1075 -0.0053
VAL 1075LEU 1076 0.0602
LEU 1076VAL 1077 -0.0128
VAL 1077GLY 1078 -0.0120
GLY 1078PRO 1079 0.0096
PRO 1079THR 1080 0.0747
THR 1080PRO 1081 -0.0158
PRO 1081VAL 1082 0.1013
VAL 1082ASN 1083 0.0164
ASN 1083ILE 1084 -0.0320
ILE 1084ILE 1084 -0.0248
ILE 1084ILE 1085 0.0064
ILE 1085GLY 1086 0.0197
GLY 1086ARG 1087 -0.0116
ARG 1087ASN 1088 -0.0563
ASN 1088LEU 1089 0.0372
LEU 1089LEU 1090 -0.0106
LEU 1090THR 1091 -0.0220
THR 1091THR 1091 -0.0243
THR 1091THR 1091 -0.0066
THR 1091GLN 1092 -0.0074
GLN 1092ILE 1093 -0.0288
ILE 1093GLY 1094 0.0942
GLY 1094CYS 1095 -0.1462
CYS 1095THR 1096 0.2016
THR 1096LEU 1097 -0.0046
LEU 1097ASN 1098 -0.1071
ASN 1098PHE 1099 -0.0685

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.