CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  HIVp-open  ***

CA strain for 2602061624473061020

---  normal mode 11  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
PRO 1001GLN 1002 -0.1618
GLN 1002ILE 1003 0.0694
ILE 1003THR 1004 -0.0884
THR 1004LEU 1005 -0.0455
LEU 1005TRP 1006 0.1200
TRP 1006LYS 1007 0.0611
LYS 1007LYS 1007 -0.0020
LYS 1007ARG 1008 0.0519
ARG 1008ARG 1008 -0.0100
ARG 1008PRO 1009 -0.0432
PRO 1009LEU 1010 0.0047
LEU 1010VAL 1011 -0.0289
VAL 1011THR 1012 -0.1357
THR 1012ILE 1013 -0.0145
ILE 1013LYS 1014 -0.0278
LYS 1014ILE 1015 -0.0159
ILE 1015GLY 1016 -0.0246
GLY 1016GLY 1017 -0.0120
GLY 1017GLN 1018 -0.0207
GLN 1018LEU 1019 -0.0546
LEU 1019LYS 1020 0.0141
LYS 1020GLU 1021 -0.1321
GLU 1021GLU 1021 0.0070
GLU 1021ALA 1022 0.0475
ALA 1022LEU 1023 0.1011
LEU 1023LEU 1024 -0.0493
LEU 1024ASP 1025 -0.0600
ASP 1025THR 1026 -0.0828
THR 1026GLY 1027 0.1094
GLY 1027ALA 1028 0.0280
ALA 1028ASP 1029 -0.0056
ASP 1029ASP 1030 0.0660
ASP 1030THR 1031 -0.0127
THR 1031VAL 1032 -0.0321
VAL 1032VAL 1032 -0.0087
VAL 1032LEU 1033 -0.0226
LEU 1033GLU 1034 0.0139
GLU 1034GLU 1035 -0.0123
GLU 1035MET 1036 -0.0027
MET 1036MET 1036 -0.0172
MET 1036ASN 1037 -0.0150
ASN 1037LEU 1038 0.0074
LEU 1038PRO 1039 -0.0276
PRO 1039GLY 1040 -0.0570
GLY 1040ARG 1041 -0.0382
ARG 1041TRP 1042 -0.0284
TRP 1042LYS 1043 0.0086
LYS 1043PRO 1044 0.0742
PRO 1044LYS 1045 0.0073
LYS 1045MET 1046 0.2369
MET 1046ILE 1047 -0.1786
ILE 1047GLY 1048 -0.2243
GLY 1048GLY 1049 -0.0975
GLY 1049ILE 1050 0.0989
ILE 1050GLY 1051 -0.0041
GLY 1051GLY 1052 -0.0050
GLY 1052PHE 1053 0.1791
PHE 1053ILE 1054 -0.0747
ILE 1054LYS 1055 -0.0669
LYS 1055VAL 1056 0.0343
VAL 1056ARG 1057 -0.0501
ARG 1057GLN 1058 0.0050
GLN 1058TYR 1059 -0.0141
TYR 1059ASP 1060 -0.0202
ASP 1060GLN 1061 -0.0204
GLN 1061ILE 1062 -0.0353
ILE 1062LEU 1063 -0.0254
LEU 1063ILE 1064 -0.0123
ILE 1064ILE 1064 -0.0057
ILE 1064GLU 1065 -0.0169
GLU 1065ILE 1066 0.0019
ILE 1066CYS 1067 -0.0509
CYS 1067GLY 1068 -0.0249
GLY 1068HIS 1069 0.0153
HIS 1069LYS 1070 -0.0533
LYS 1070ALA 1071 -0.0043
ALA 1071ILE 1072 -0.0091
ILE 1072GLY 1073 -0.0247
GLY 1073THR 1074 -0.0682
THR 1074VAL 1075 -0.0023
VAL 1075LEU 1076 -0.0812
LEU 1076VAL 1077 0.0091
VAL 1077GLY 1078 -0.0243
GLY 1078PRO 1079 -0.0324
PRO 1079THR 1080 0.0438
THR 1080PRO 1081 -0.0316
PRO 1081VAL 1082 -0.0006
VAL 1082ASN 1083 0.0203
ASN 1083ILE 1084 0.0086
ILE 1084ILE 1084 -0.0081
ILE 1084ILE 1085 -0.0269
ILE 1085GLY 1086 -0.0369
GLY 1086ARG 1087 -0.0195
ARG 1087ASN 1088 0.1248
ASN 1088LEU 1089 -0.0271
LEU 1089LEU 1090 0.0345
LEU 1090THR 1091 0.0343
THR 1091THR 1091 -0.0367
THR 1091THR 1091 0.0008
THR 1091GLN 1092 0.0179
GLN 1092ILE 1093 -0.0062
ILE 1093GLY 1094 0.0663
GLY 1094CYS 1095 0.0020
CYS 1095THR 1096 -0.0923
THR 1096LEU 1097 0.0711
LEU 1097ASN 1098 0.0760
ASN 1098PHE 1099 -0.0474

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.