CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  HIVp-open  ***

CA strain for 2602061624473061020

---  normal mode 8  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
PRO 1001GLN 1002 0.1444
GLN 1002ILE 1003 0.0451
ILE 1003THR 1004 -0.1083
THR 1004LEU 1005 -0.0511
LEU 1005TRP 1006 0.0445
TRP 1006LYS 1007 0.0412
LYS 1007LYS 1007 0.0046
LYS 1007ARG 1008 0.0335
ARG 1008ARG 1008 0.0002
ARG 1008PRO 1009 -0.0099
PRO 1009LEU 1010 0.0302
LEU 1010VAL 1011 -0.0883
VAL 1011THR 1012 -0.0308
THR 1012ILE 1013 -0.0168
ILE 1013LYS 1014 -0.0171
LYS 1014ILE 1015 0.0042
ILE 1015GLY 1016 -0.0255
GLY 1016GLY 1017 -0.0304
GLY 1017GLN 1018 -0.0001
GLN 1018LEU 1019 -0.0357
LEU 1019LYS 1020 0.0268
LYS 1020GLU 1021 -0.0718
GLU 1021GLU 1021 0.0030
GLU 1021ALA 1022 0.0074
ALA 1022LEU 1023 0.0127
LEU 1023LEU 1024 -0.0328
LEU 1024ASP 1025 0.0474
ASP 1025THR 1026 -0.1845
THR 1026GLY 1027 -0.0845
GLY 1027ALA 1028 -0.0892
ALA 1028ASP 1029 0.0126
ASP 1029ASP 1030 -0.0165
ASP 1030THR 1031 -0.0189
THR 1031VAL 1032 -0.0467
VAL 1032VAL 1032 -0.0046
VAL 1032LEU 1033 -0.0160
LEU 1033GLU 1034 0.0343
GLU 1034GLU 1035 -0.0869
GLU 1035MET 1036 0.0759
MET 1036MET 1036 0.0270
MET 1036ASN 1037 -0.0196
ASN 1037LEU 1038 0.0179
LEU 1038PRO 1039 -0.0062
PRO 1039GLY 1040 -0.0515
GLY 1040ARG 1041 -0.0490
ARG 1041TRP 1042 -0.0084
TRP 1042LYS 1043 -0.0259
LYS 1043PRO 1044 -0.0007
PRO 1044LYS 1045 0.0153
LYS 1045MET 1046 -0.2707
MET 1046ILE 1047 0.1647
ILE 1047GLY 1048 -0.0731
GLY 1048GLY 1049 0.0194
GLY 1049ILE 1050 -0.0617
ILE 1050GLY 1051 0.0046
GLY 1051GLY 1052 0.0369
GLY 1052PHE 1053 0.0394
PHE 1053ILE 1054 0.2139
ILE 1054LYS 1055 0.2446
LYS 1055VAL 1056 0.0388
VAL 1056ARG 1057 0.0685
ARG 1057GLN 1058 0.0167
GLN 1058TYR 1059 -0.0670
TYR 1059ASP 1060 0.0019
ASP 1060GLN 1061 -0.0352
GLN 1061ILE 1062 -0.0243
ILE 1062LEU 1063 -0.0302
LEU 1063ILE 1064 -0.0176
ILE 1064ILE 1064 -0.0058
ILE 1064GLU 1065 -0.0168
GLU 1065ILE 1066 0.0019
ILE 1066CYS 1067 0.0179
CYS 1067GLY 1068 -0.0118
GLY 1068HIS 1069 0.0304
HIS 1069LYS 1070 -0.0615
LYS 1070ALA 1071 -0.0289
ALA 1071ILE 1072 -0.0049
ILE 1072GLY 1073 -0.0382
GLY 1073THR 1074 -0.0945
THR 1074VAL 1075 0.0142
VAL 1075LEU 1076 -0.0598
LEU 1076VAL 1077 -0.0284
VAL 1077GLY 1078 0.0373
GLY 1078PRO 1079 0.0016
PRO 1079THR 1080 -0.1236
THR 1080PRO 1081 0.0561
PRO 1081VAL 1082 0.0158
VAL 1082ASN 1083 -0.0094
ASN 1083ILE 1084 -0.0301
ILE 1084ILE 1084 -0.0000
ILE 1084ILE 1085 -0.0298
ILE 1085GLY 1086 -0.0051
GLY 1086ARG 1087 -0.0276
ARG 1087ASN 1088 0.0827
ASN 1088LEU 1089 -0.0355
LEU 1089LEU 1090 0.0458
LEU 1090THR 1091 0.0116
THR 1091THR 1091 0.0298
THR 1091THR 1091 0.0011
THR 1091GLN 1092 0.0128
GLN 1092ILE 1093 -0.0157
ILE 1093GLY 1094 0.1293
GLY 1094CYS 1095 -0.1112
CYS 1095THR 1096 0.1338
THR 1096LEU 1097 0.0142
LEU 1097ASN 1098 -0.0999
ASN 1098PHE 1099 0.0026

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.