CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  HIV_apo  ***

CA distance fluctuations for 2602061631263072433

---  normal mode 8  ---

This matrix displays the maximum distance fluctuations between all pairs of CA atoms and between the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Distance increases are plotted in blue and decreases in red for the strongest 10% of the residue pair distance changes. Every pixel corresponds to a single residue. Grey lines are drawn every 10 residues, yellow lines every 100 residues (counting from the upper left corner).

The following table indicates for every residue the two corresponding residues with the strongest CA distance fluctuations.

[HELP on distance fluctuations]

GD ok
largest increasereflargest decrease
ASP 1060 0.10 PRO 1001 -0.18 GLY 1051
ASP 1060 0.10 GLN 1002 -0.18 GLY 1051
CYS 1067 0.13 ILE 1003 -0.24 GLY 1051
CYS 1067 0.15 THR 1004 -0.27 GLY 1051
ASP 1060 0.16 LEU 1005 -0.33 ILE 1050
ASP 1060 0.22 TRP 1006 -0.40 ILE 1050
ASP 1060 0.25 LYS 1007 -0.46 ILE 1050
ASP 1060 0.25 LYS 1007 -0.46 ILE 1050
ASP 1060 0.24 ARG 1008 -0.48 ILE 1050
ASP 1060 0.24 ARG 1008 -0.48 ILE 1050
ASP 1060 0.19 PRO 1009 -0.37 GLY 1051
ASP 1060 0.21 LEU 1010 -0.41 GLY 1051
ASP 1060 0.20 VAL 1011 -0.34 GLY 1051
ASP 1060 0.20 THR 1012 -0.33 GLY 1051
LYS 1043 0.17 ILE 1013 -0.28 GLY 1051
LYS 1045 0.17 LYS 1014 -0.24 GLY 1051
GLY 1049 0.19 ILE 1015 -0.22 GLY 1051
GLY 1049 0.21 GLY 1016 -0.20 GLY 1051
MET 1046 0.18 GLY 1017 -0.22 GLY 1051
LYS 1045 0.20 GLN 1018 -0.28 GLY 1051
LYS 1043 0.20 LEU 1019 -0.33 GLY 1051
LYS 1045 0.22 LYS 1020 -0.37 GLY 1051
LYS 1043 0.23 GLU 1021 -0.42 GLY 1051
LYS 1043 0.23 GLU 1021 -0.41 GLY 1051
LYS 1045 0.21 ALA 1022 -0.39 GLY 1051
LYS 1045 0.18 LEU 1023 -0.39 GLY 1051
LYS 1045 0.14 LEU 1024 -0.26 GLY 1051
ILE 1050 0.20 ASP 1025 -0.24 ILE 1050
ILE 1050 0.29 THR 1026 -0.12 ASP 1060
ILE 1050 0.43 GLY 1027 -0.16 LYS 1045
ILE 1050 0.53 ALA 1028 -0.16 GLN 1058
ILE 1050 0.58 ASP 1029 -0.22 ASP 1060
ILE 1050 0.50 ASP 1030 -0.19 ASP 1029
ILE 1050 0.37 THR 1031 -0.14 PRO 1081
GLY 1049 0.40 VAL 1032 -0.24 GLY 1051
GLY 1049 0.40 VAL 1032 -0.25 GLY 1051
GLY 1049 0.36 LEU 1033 -0.33 GLY 1051
GLY 1049 0.39 GLU 1034 -0.40 GLY 1051
GLY 1049 0.39 GLU 1035 -0.34 GLY 1051
GLY 1049 0.31 MET 1036 -0.28 GLY 1051
GLY 1049 0.31 MET 1036 -0.28 GLY 1051
GLY 1049 0.29 ASN 1037 -0.22 GLY 1051
GLY 1049 0.28 LEU 1038 -0.16 GLY 1051
GLY 1049 0.26 PRO 1039 -0.14 LYS 1007
GLY 1049 0.26 GLY 1040 -0.19 LYS 1007
ILE 1050 0.29 ARG 1041 -0.21 LYS 1007
ILE 1050 0.33 TRP 1042 -0.22 PRO 1081
ILE 1050 0.38 LYS 1043 -0.26 PRO 1081
ILE 1050 0.44 PRO 1044 -0.28 PRO 1081
ILE 1050 0.50 LYS 1045 -0.35 PRO 1081
ILE 1050 0.58 MET 1046 -0.41 PRO 1081
ILE 1050 0.64 ILE 1047 -0.42 PRO 1081
ILE 1050 0.69 GLY 1048 -0.41 THR 1080
GLY 1051 0.46 GLY 1049 -0.62 ILE 1054
LYS 1007 0.37 ILE 1050 -0.84 ILE 1054
LYS 1007 0.29 GLY 1051 -0.73 GLY 1052
GLY 1051 0.73 GLY 1052 -0.37 ILE 1054
ILE 1050 0.75 PHE 1053 -0.28 THR 1080
ILE 1050 0.84 ILE 1054 -0.19 GLY 1051
ILE 1050 0.63 LYS 1055 -0.20 PRO 1081
ILE 1050 0.51 VAL 1056 -0.20 PRO 1081
ILE 1050 0.41 ARG 1057 -0.21 PRO 1081
ILE 1050 0.39 GLN 1058 -0.25 PRO 1081
ILE 1050 0.32 TYR 1059 -0.20 PRO 1081
ILE 1050 0.31 ASP 1060 -0.25 LYS 1007
ILE 1050 0.26 GLN 1061 -0.22 LYS 1007
GLY 1049 0.24 ILE 1062 -0.16 LYS 1007
GLY 1049 0.20 LEU 1063 -0.12 LYS 1007
GLY 1049 0.18 ILE 1064 -0.14 GLY 1051
GLY 1049 0.18 ILE 1064 -0.14 GLY 1051
LYS 1045 0.13 GLU 1065 -0.17 GLY 1051
LYS 1043 0.14 ILE 1066 -0.19 GLY 1051
ASP 1060 0.16 CYS 1067 -0.23 GLY 1051
ASP 1060 0.14 GLY 1068 -0.18 GLY 1051
LYS 1043 0.11 HIS 1069 -0.12 GLY 1051
GLY 1049 0.13 LYS 1070 -0.09 GLY 1051
GLY 1049 0.18 ALA 1071 -0.10 GLN 1092
ILE 1050 0.23 ILE 1072 -0.13 LYS 1007
ILE 1050 0.29 GLY 1073 -0.19 LYS 1007
ILE 1050 0.34 THR 1074 -0.21 ARG 1008
ILE 1050 0.33 VAL 1075 -0.16 PRO 1081
ILE 1050 0.40 LEU 1076 -0.19 PRO 1081
GLY 1049 0.41 VAL 1077 -0.23 GLY 1051
GLY 1049 0.49 GLY 1078 -0.32 GLY 1051
GLY 1049 0.60 PRO 1079 -0.45 GLY 1051
GLY 1049 0.58 THR 1080 -0.54 GLY 1051
GLY 1049 0.56 PRO 1081 -0.69 GLY 1051
MET 1046 0.33 VAL 1082 -0.58 GLY 1051
GLY 1049 0.29 ASN 1083 -0.43 GLY 1051
GLY 1049 0.29 ILE 1084 -0.33 GLY 1051
GLY 1049 0.29 ILE 1084 -0.33 GLY 1051
GLY 1049 0.24 ILE 1085 -0.20 GLY 1051
ILE 1050 0.36 GLY 1086 -0.12 ASP 1060
ILE 1050 0.38 ARG 1087 -0.17 ASP 1060
ILE 1050 0.39 ASN 1088 -0.18 ASP 1060
ILE 1050 0.28 LEU 1089 -0.12 ARG 1087
ILE 1050 0.23 LEU 1090 -0.09 THR 1012
ILE 1050 0.28 THR 1091 -0.12 GLN 1061
ILE 1050 0.28 THR 1091 -0.12 GLN 1061
ILE 1050 0.28 THR 1091 -0.13 GLN 1061
ILE 1050 0.25 GLN 1092 -0.11 THR 1012
ILE 1050 0.16 ILE 1093 -0.09 THR 1012
ILE 1050 0.17 GLY 1094 -0.09 THR 1012
ILE 1050 0.14 CYS 1095 -0.07 THR 1012
GLY 1051 0.16 THR 1096 -0.08 ASP 1060
GLY 1051 0.15 LEU 1097 -0.09 ASP 1060
GLY 1051 0.11 ASN 1098 -0.07 ASP 1060
GLY 1051 0.09 PHE 1099 -0.07 ASP 1060
GLY 1051 0.18 PRO 1001 -0.10 ASP 1060
GLY 1051 0.18 GLN 1002 -0.10 ASP 1060
GLY 1051 0.24 ILE 1003 -0.13 CYS 1067
GLY 1051 0.27 THR 1004 -0.15 CYS 1067
ILE 1050 0.33 LEU 1005 -0.16 ASP 1060
ILE 1050 0.40 TRP 1006 -0.22 ASP 1060
ILE 1050 0.46 LYS 1007 -0.25 ASP 1060
ILE 1050 0.46 LYS 1007 -0.25 ASP 1060
ILE 1050 0.48 ARG 1008 -0.24 ASP 1060
ILE 1050 0.48 ARG 1008 -0.24 ASP 1060
GLY 1051 0.37 PRO 1009 -0.19 ASP 1060
GLY 1051 0.41 LEU 1010 -0.21 ASP 1060
GLY 1051 0.34 VAL 1011 -0.20 ASP 1060
GLY 1051 0.33 THR 1012 -0.20 ASP 1060
GLY 1051 0.28 ILE 1013 -0.17 LYS 1043
GLY 1051 0.24 LYS 1014 -0.17 LYS 1045
GLY 1051 0.22 ILE 1015 -0.19 GLY 1049
GLY 1051 0.20 GLY 1016 -0.21 GLY 1049
GLY 1051 0.22 GLY 1017 -0.18 MET 1046
GLY 1051 0.28 GLN 1018 -0.20 LYS 1045
GLY 1051 0.33 LEU 1019 -0.20 LYS 1043
GLY 1051 0.37 LYS 1020 -0.22 LYS 1045
GLY 1051 0.42 GLU 1021 -0.23 LYS 1043
GLY 1051 0.41 GLU 1021 -0.23 LYS 1043
GLY 1051 0.39 ALA 1022 -0.21 LYS 1045
GLY 1051 0.39 LEU 1023 -0.18 LYS 1045
GLY 1051 0.26 LEU 1024 -0.14 LYS 1045
ILE 1050 0.24 ASP 1025 -0.20 ILE 1050
ASP 1060 0.12 THR 1026 -0.29 ILE 1050
LYS 1045 0.16 GLY 1027 -0.43 ILE 1050
GLN 1058 0.16 ALA 1028 -0.53 ILE 1050
ASP 1060 0.22 ASP 1029 -0.58 ILE 1050
ASP 1029 0.19 ASP 1030 -0.50 ILE 1050
PRO 1081 0.14 THR 1031 -0.37 ILE 1050
GLY 1051 0.24 VAL 1032 -0.40 GLY 1049
GLY 1051 0.25 VAL 1032 -0.40 GLY 1049
GLY 1051 0.33 LEU 1033 -0.36 GLY 1049
GLY 1051 0.40 GLU 1034 -0.39 GLY 1049
GLY 1051 0.34 GLU 1035 -0.39 GLY 1049
GLY 1051 0.28 MET 1036 -0.31 GLY 1049
GLY 1051 0.28 MET 1036 -0.31 GLY 1049
GLY 1051 0.22 ASN 1037 -0.29 GLY 1049
GLY 1051 0.16 LEU 1038 -0.28 GLY 1049
LYS 1007 0.14 PRO 1039 -0.26 GLY 1049
LYS 1007 0.19 GLY 1040 -0.26 GLY 1049
LYS 1007 0.21 ARG 1041 -0.29 ILE 1050
PRO 1081 0.22 TRP 1042 -0.33 ILE 1050
PRO 1081 0.26 LYS 1043 -0.38 ILE 1050
PRO 1081 0.28 PRO 1044 -0.44 ILE 1050
PRO 1081 0.35 LYS 1045 -0.50 ILE 1050
PRO 1081 0.41 MET 1046 -0.58 ILE 1050
PRO 1081 0.42 ILE 1047 -0.64 ILE 1050
THR 1080 0.41 GLY 1048 -0.69 ILE 1050
ILE 1054 0.62 GLY 1049 -0.46 GLY 1051
ILE 1054 0.84 ILE 1050 -0.37 LYS 1007
GLY 1052 0.73 GLY 1051 -0.29 LYS 1007
ILE 1054 0.37 GLY 1052 -0.73 GLY 1051
THR 1080 0.28 PHE 1053 -0.75 ILE 1050
GLY 1051 0.19 ILE 1054 -0.84 ILE 1050
PRO 1081 0.20 LYS 1055 -0.63 ILE 1050
PRO 1081 0.20 VAL 1056 -0.51 ILE 1050
PRO 1081 0.21 ARG 1057 -0.41 ILE 1050
PRO 1081 0.25 GLN 1058 -0.39 ILE 1050
PRO 1081 0.20 TYR 1059 -0.32 ILE 1050
LYS 1007 0.25 ASP 1060 -0.31 ILE 1050
LYS 1007 0.22 GLN 1061 -0.26 ILE 1050
LYS 1007 0.16 ILE 1062 -0.24 GLY 1049
LYS 1007 0.12 LEU 1063 -0.20 GLY 1049
GLY 1051 0.14 ILE 1064 -0.18 GLY 1049
GLY 1051 0.14 ILE 1064 -0.18 GLY 1049
GLY 1051 0.17 GLU 1065 -0.13 LYS 1045
GLY 1051 0.19 ILE 1066 -0.14 LYS 1043
GLY 1051 0.23 CYS 1067 -0.16 ASP 1060
GLY 1051 0.18 GLY 1068 -0.14 ASP 1060
GLY 1051 0.12 HIS 1069 -0.11 LYS 1043
GLY 1051 0.09 LYS 1070 -0.13 GLY 1049
GLN 1092 0.10 ALA 1071 -0.18 GLY 1049
LYS 1007 0.13 ILE 1072 -0.23 ILE 1050
LYS 1007 0.19 GLY 1073 -0.29 ILE 1050
ARG 1008 0.21 THR 1074 -0.34 ILE 1050
PRO 1081 0.16 VAL 1075 -0.33 ILE 1050
PRO 1081 0.19 LEU 1076 -0.40 ILE 1050
GLY 1051 0.23 VAL 1077 -0.41 GLY 1049
GLY 1051 0.32 GLY 1078 -0.49 GLY 1049
GLY 1051 0.45 PRO 1079 -0.60 GLY 1049
GLY 1051 0.54 THR 1080 -0.58 GLY 1049
GLY 1051 0.69 PRO 1081 -0.56 GLY 1049
GLY 1051 0.58 VAL 1082 -0.33 MET 1046
GLY 1051 0.43 ASN 1083 -0.29 GLY 1049
GLY 1051 0.33 ILE 1084 -0.29 GLY 1049
GLY 1051 0.33 ILE 1084 -0.29 GLY 1049
GLY 1051 0.20 ILE 1085 -0.24 GLY 1049
ASP 1060 0.12 GLY 1086 -0.36 ILE 1050
ASP 1060 0.17 ARG 1087 -0.38 ILE 1050
ASP 1060 0.18 ASN 1088 -0.39 ILE 1050
ARG 1087 0.12 LEU 1089 -0.28 ILE 1050
THR 1012 0.09 LEU 1090 -0.23 ILE 1050
GLN 1061 0.12 THR 1091 -0.28 ILE 1050
GLN 1061 0.12 THR 1091 -0.28 ILE 1050
GLN 1061 0.13 THR 1091 -0.28 ILE 1050
THR 1012 0.11 GLN 1092 -0.25 ILE 1050
THR 1012 0.09 ILE 1093 -0.16 ILE 1050
THR 1012 0.09 GLY 1094 -0.17 ILE 1050
THR 1012 0.07 CYS 1095 -0.14 ILE 1050
ASP 1060 0.08 THR 1096 -0.16 GLY 1051
ASP 1060 0.09 LEU 1097 -0.15 GLY 1051
ASP 1060 0.07 ASN 1098 -0.11 GLY 1051
ASP 1060 0.07 PHE 1099 -0.09 GLY 1051

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.