CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  HIV_apo  ***

Normal Mode Analysis for ID 2602061631263072433

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.4142
mode 8 1.12 0.2933
mode 9 1.21 0.6711
mode 10 1.49 0.2076
mode 11 1.59 0.1621
mode 12 1.74 0.1116
mode 13 1.76 0.3258
mode 14 1.96 0.1266
mode 15 1.98 0.1942
mode 16 2.14 0.0690
mode 17 2.15 0.0435
mode 18 2.21 0.3926
mode 19 2.25 0.1445
mode 20 2.32 0.2490
mode 21 2.61 0.7336
mode 22 2.67 0.3326
mode 23 2.76 0.4021
mode 24 3.07 0.0726
mode 25 3.08 0.0857
mode 26 3.13 0.2741
mode 27 3.16 0.1453
mode 28 3.26 0.1508
mode 29 3.30 0.3490
mode 30 3.36 0.0654
mode 31 3.37 0.0197
mode 32 3.42 0.2971
mode 33 3.47 0.3396
mode 34 3.51 0.2656
mode 35 3.55 0.2309
mode 36 3.66 0.4174
mode 37 3.67 0.5007
mode 38 3.83 0.3963
mode 39 3.84 0.4454
mode 40 3.86 0.1089
mode 41 3.90 0.2254
mode 42 4.01 0.2595
mode 43 4.04 0.1994
mode 44 4.05 0.2002
mode 45 4.09 0.5538
mode 46 4.17 0.1274
mode 47 4.22 0.4190
mode 48 4.25 0.5260
mode 49 4.30 0.5432
mode 50 4.31 0.4973
mode 51 4.41 0.2111
mode 52 4.47 0.0665
mode 53 4.48 0.1795
mode 54 4.53 0.0967
mode 55 4.55 0.6060
mode 56 4.59 0.3616
mode 57 4.60 0.3712
mode 58 4.69 0.4969
mode 59 4.76 0.4048
mode 60 4.78 0.3910
mode 61 4.82 0.5656
mode 62 4.83 0.4024
mode 63 4.89 0.4331
mode 64 4.93 0.3057
mode 65 4.96 0.5656
mode 66 5.02 0.3868
mode 67 5.10 0.3093
mode 68 5.10 0.5528
mode 69 5.10 0.4192
mode 70 5.11 0.3786
mode 71 5.16 0.3579
mode 72 5.22 0.2906
mode 73 5.25 0.4446
mode 74 5.28 0.1088
mode 75 5.30 0.0812
mode 76 5.38 0.4042
mode 77 5.38 0.4518
mode 78 5.39 0.3904
mode 79 5.43 0.4535
mode 80 5.43 0.1847
mode 81 5.45 0.1579
mode 82 5.50 0.3750
mode 83 5.53 0.2672
mode 84 5.58 0.3070
mode 85 5.59 0.3407
mode 86 5.61 0.4629
mode 87 5.61 0.2899
mode 88 5.68 0.3776
mode 89 5.68 0.3131
mode 90 5.73 0.2468
mode 91 5.75 0.2257
mode 92 5.78 0.4431
mode 93 5.82 0.3484
mode 94 5.87 0.4582
mode 95 5.88 0.4819
mode 96 5.92 0.3938
mode 97 5.96 0.4840
mode 98 5.99 0.4081
mode 99 6.01 0.3935
mode 100 6.03 0.4136
mode 101 6.09 0.3362
mode 102 6.11 0.2499
mode 103 6.16 0.0986
mode 104 6.16 0.3100
mode 105 6.19 0.0661
mode 106 6.22 0.1698

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.