CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  PROTEIN TRANSPORT 21-NOV-13 4CG7  ***

Normal Mode Analysis for ID 2602160935392533103

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.3116
mode 8 1.15 0.2803
mode 9 1.34 0.4423
mode 10 1.58 0.4312
mode 11 1.64 0.3324
mode 12 1.66 0.1305
mode 13 1.87 0.0807
mode 14 2.01 0.3208
mode 15 2.03 0.3424
mode 16 2.15 0.2212
mode 17 2.28 0.3938
mode 18 2.33 0.1115
mode 19 2.54 0.3739
mode 20 2.61 0.3537
mode 21 2.64 0.1096
mode 22 2.76 0.4369
mode 23 2.87 0.2262
mode 24 2.94 0.1955
mode 25 2.97 0.4658
mode 26 3.08 0.5048
mode 27 3.18 0.4828
mode 28 3.24 0.5161
mode 29 3.25 0.2447
mode 30 3.32 0.3534
mode 31 3.37 0.3610
mode 32 3.48 0.3989
mode 33 3.55 0.1939
mode 34 3.65 0.5972
mode 35 3.69 0.2020
mode 36 3.76 0.2927
mode 37 3.85 0.5442
mode 38 3.96 0.4041
mode 39 4.11 0.5197
mode 40 4.13 0.3685
mode 41 4.20 0.4722
mode 42 4.27 0.2825
mode 43 4.33 0.5414
mode 44 4.35 0.5021
mode 45 4.40 0.1245
mode 46 4.54 0.4057
mode 47 4.64 0.5024
mode 48 4.78 0.2346
mode 49 4.82 0.3853
mode 50 4.83 0.2488
mode 51 4.89 0.4842
mode 52 4.99 0.4533
mode 53 5.01 0.4550
mode 54 5.05 0.4233
mode 55 5.11 0.3716
mode 56 5.15 0.4586
mode 57 5.23 0.2447
mode 58 5.28 0.3730
mode 59 5.34 0.4903
mode 60 5.43 0.3543
mode 61 5.47 0.4148
mode 62 5.49 0.5033
mode 63 5.60 0.4800
mode 64 5.66 0.5369
mode 65 5.72 0.2633
mode 66 5.77 0.5018
mode 67 5.82 0.4149
mode 68 5.89 0.4521
mode 69 5.95 0.3406
mode 70 6.00 0.4005
mode 71 6.05 0.4481
mode 72 6.09 0.5136
mode 73 6.21 0.4717
mode 74 6.23 0.3380
mode 75 6.30 0.4839
mode 76 6.34 0.4680
mode 77 6.37 0.3526
mode 78 6.47 0.5366
mode 79 6.49 0.4883
mode 80 6.56 0.4371
mode 81 6.58 0.3096
mode 82 6.64 0.5008
mode 83 6.68 0.4673
mode 84 6.74 0.5364
mode 85 6.83 0.3527
mode 86 6.87 0.3601
mode 87 6.89 0.4248
mode 88 6.97 0.4976
mode 89 6.99 0.4235
mode 90 7.04 0.5500
mode 91 7.06 0.5559
mode 92 7.20 0.3995
mode 93 7.28 0.5759
mode 94 7.30 0.5012
mode 95 7.35 0.2879
mode 96 7.39 0.4812
mode 97 7.45 0.4579
mode 98 7.47 0.4101
mode 99 7.57 0.3835
mode 100 7.58 0.3287
mode 101 7.60 0.5288
mode 102 7.67 0.4533
mode 103 7.75 0.4628
mode 104 7.78 0.5092
mode 105 7.85 0.5864
mode 106 7.93 0.4863

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.