CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  SUGAR BINDING PROTEIN 10-JUL-21 7RDP  ***

Normal Mode Analysis for ID 2602161336172593279

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 1 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.2605
mode 8 1.16 0.3815
mode 9 1.27 0.2180
mode 10 1.37 0.2141
mode 11 1.46 0.0087
mode 12 1.56 0.3629
mode 13 1.62 0.1735
mode 14 1.66 0.3064
mode 15 1.75 0.2148
mode 16 1.87 0.2972
mode 17 1.90 0.3691
mode 18 1.98 0.3228
mode 19 2.00 0.5111
mode 20 2.04 0.5888
mode 21 2.04 0.4047
mode 22 2.18 0.5159
mode 23 2.22 0.5203
mode 24 2.30 0.4397
mode 25 2.31 0.6489
mode 26 2.35 0.5336
mode 27 2.39 0.3892
mode 28 2.45 0.3167
mode 29 2.47 0.4566
mode 30 2.53 0.3184
mode 31 2.55 0.3589
mode 32 2.58 0.4691
mode 33 2.66 0.3029
mode 34 2.66 0.3767
mode 35 2.71 0.3267
mode 36 2.74 0.3080
mode 37 2.80 0.4666
mode 38 2.86 0.0452
mode 39 2.91 0.5197
mode 40 2.92 0.3732
mode 41 2.95 0.2599
mode 42 2.98 0.3324
mode 43 3.01 0.2613
mode 44 3.04 0.3554
mode 45 3.06 0.5060
mode 46 3.09 0.2805
mode 47 3.11 0.2145
mode 48 3.11 0.4051
mode 49 3.16 0.2716
mode 50 3.22 0.2832
mode 51 3.26 0.4068
mode 52 3.26 0.5160
mode 53 3.29 0.3387
mode 54 3.31 0.3601
mode 55 3.34 0.3065
mode 56 3.36 0.3138
mode 57 3.39 0.2535
mode 58 3.41 0.3826
mode 59 3.41 0.4069
mode 60 3.44 0.3668
mode 61 3.47 0.4126
mode 62 3.50 0.3449
mode 63 3.53 0.4756
mode 64 3.55 0.4540
mode 65 3.57 0.4532
mode 66 3.62 0.4407
mode 67 3.64 0.3914
mode 68 3.67 0.5269
mode 69 3.71 0.4329
mode 70 3.72 0.4868
mode 71 3.75 0.4922
mode 72 3.75 0.3822
mode 73 3.80 0.4081
mode 74 3.81 0.2960
mode 75 3.84 0.3267
mode 76 3.85 0.3646
mode 77 3.86 0.3535
mode 78 3.87 0.4399
mode 79 3.89 0.4408
mode 80 3.93 0.4124
mode 81 3.94 0.3984
mode 82 3.98 0.1778
mode 83 4.00 0.3457
mode 84 4.01 0.3280
mode 85 4.03 0.4049
mode 86 4.04 0.2446
mode 87 4.06 0.3586
mode 88 4.08 0.3992
mode 89 4.11 0.4915
mode 90 4.12 0.4502
mode 91 4.15 0.0452
mode 92 4.16 0.4005
mode 93 4.18 0.4225
mode 94 4.20 0.3455
mode 95 4.22 0.4089
mode 96 4.23 0.3688
mode 97 4.26 0.3797
mode 98 4.27 0.4074
mode 99 4.28 0.2731
mode 100 4.29 0.2256
mode 101 4.32 0.2678
mode 102 4.32 0.2539
mode 103 4.35 0.4543
mode 104 4.35 0.4264
mode 105 4.39 0.3912
mode 106 4.40 0.4200

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.