CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  MEMBRANE PROTEIN 08-AUG-00 1FJK  ***

CA strain for 2602161734182647216

---  normal mode 7  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
MET 1ASP 2 -0.0018
ASP 2LYS 3 -0.0025
LYS 3VAL 4 0.0027
VAL 4GLN 5 -0.0011
GLN 5TYR 6 -0.0027
TYR 6LEU 7 0.0022
LEU 7THR 8 0.0036
THR 8ARG 9 -0.0043
ARG 9SER 10 -0.0032
SER 10ALA 11 0.0066
ALA 11ILE 12 -0.0037
ILE 12ARG 13 -0.0034
ARG 13ARG 14 0.0054
ARG 14ALA 15 0.0092
ALA 15SER 16 0.0239
SER 16THR 17 -0.0282
THR 17ILE 18 0.0296
ILE 18GLU 19 0.0046
GLU 19MET 20 -0.0254
MET 20PRO 21 0.0061
PRO 21GLN 22 -0.0170
GLN 22GLN 23 0.0191
GLN 23ALA 24 0.0548
ALA 24ARG 25 -0.0076
ARG 25GLN 26 0.0255
GLN 26ASN 27 0.0142
ASN 27LEU 28 -0.0377
LEU 28GLN 29 0.0012
GLN 29ASN 30 -0.0065
ASN 30LEU 31 -0.0220
LEU 31PHE 32 0.0004
PHE 32ILE 33 0.0077
ILE 33ASN 34 -0.0056
ASN 34PHE 35 -0.0220
PHE 35CYS 36 0.0046
CYS 36LEU 37 0.0012
LEU 37ILE 38 -0.0129
ILE 38LEU 39 -0.0076
LEU 39ILE 40 0.0064
ILE 40PHE 41 0.0011
PHE 41LEU 42 -0.0084
LEU 42LEU 43 0.0067
LEU 43LEU 44 0.0010
LEU 44ILE 45 -0.0008
ILE 45CYS 46 -0.0037
CYS 46ILE 47 0.0038
ILE 47ILE 48 0.0003
ILE 48VAL 49 -0.0033
VAL 49MET 50 0.0004
MET 50LEU 51 0.0019
LEU 51LEU 52 -0.0008

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.