CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  MEMBRANE PROTEIN 08-AUG-00 1FJK  ***

CA strain for 2602161734182647216

---  normal mode 8  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
MET 1ASP 2 0.0011
ASP 2LYS 3 0.0039
LYS 3VAL 4 -0.0005
VAL 4GLN 5 -0.0056
GLN 5TYR 6 0.0029
TYR 6LEU 7 0.0009
LEU 7THR 8 -0.0101
THR 8ARG 9 0.0096
ARG 9SER 10 0.0037
SER 10ALA 11 -0.0140
ALA 11ILE 12 0.0022
ILE 12ARG 13 -0.0058
ARG 13ARG 14 0.0159
ARG 14ALA 15 -0.0074
ALA 15SER 16 -0.0301
SER 16THR 17 0.0511
THR 17ILE 18 -0.0130
ILE 18GLU 19 -0.0343
GLU 19MET 20 0.0226
MET 20PRO 21 -0.0181
PRO 21GLN 22 -0.0692
GLN 22GLN 23 -0.0318
GLN 23ALA 24 -0.0572
ALA 24ARG 25 -0.0196
ARG 25GLN 26 0.0080
GLN 26ASN 27 -0.0475
ASN 27LEU 28 -0.0151
LEU 28GLN 29 -0.0200
GLN 29ASN 30 0.0021
ASN 30LEU 31 -0.0430
LEU 31PHE 32 -0.0184
PHE 32ILE 33 -0.0316
ILE 33ASN 34 -0.0108
ASN 34PHE 35 -0.0265
PHE 35CYS 36 -0.0112
CYS 36LEU 37 -0.0109
LEU 37ILE 38 -0.0153
ILE 38LEU 39 -0.0071
LEU 39ILE 40 -0.0034
ILE 40PHE 41 -0.0008
PHE 41LEU 42 -0.0067
LEU 42LEU 43 0.0046
LEU 43LEU 44 -0.0003
LEU 44ILE 45 -0.0026
ILE 45CYS 46 -0.0095
CYS 46ILE 47 0.0043
ILE 47ILE 48 -0.0026
ILE 48VAL 49 -0.0059
VAL 49MET 50 -0.0000
MET 50LEU 51 0.0017
LEU 51LEU 52 -0.0019

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.