CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  MEMBRANE PROTEIN 08-AUG-00 1FJK  ***

CA strain for 2602191523143544534

---  normal mode 9  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
MET 1ASP 2 -0.0004
ASP 2LYS 3 0.0006
LYS 3VAL 4 -0.0003
VAL 4GLN 5 -0.0092
GLN 5TYR 6 0.0014
TYR 6LEU 7 -0.0006
LEU 7THR 8 -0.0177
THR 8ARG 9 -0.0021
ARG 9SER 10 -0.0007
SER 10ALA 11 -0.0125
ALA 11ILE 12 -0.0072
ILE 12ARG 13 -0.0037
ARG 13ARG 14 0.0027
ARG 14ALA 15 -0.0236
ALA 15SER 16 -0.0258
SER 16THR 17 0.0019
THR 17ILE 18 0.0004
ILE 18GLU 19 -0.0287
GLU 19MET 20 -0.0255
MET 20PRO 21 -0.0121
PRO 21GLN 22 -0.0341
GLN 22GLN 23 -0.0197
GLN 23ALA 24 0.0618
ALA 24ARG 25 -0.0605
ARG 25GLN 26 0.0070
GLN 26ASN 27 0.0113
ASN 27LEU 28 -0.0192
LEU 28GLN 29 -0.0182
GLN 29ASN 30 0.0443
ASN 30LEU 31 0.0244
LEU 31PHE 32 -0.0634
PHE 32ILE 33 0.0041
ILE 33ASN 34 0.0392
ASN 34PHE 35 -0.0159
PHE 35CYS 36 -0.0101
CYS 36LEU 37 0.0266
LEU 37ILE 38 0.0119
ILE 38LEU 39 -0.0132
LEU 39ILE 40 -0.0049
ILE 40PHE 41 0.0092
PHE 41LEU 42 0.0139
LEU 42LEU 43 -0.0314
LEU 43LEU 44 -0.0078
LEU 44ILE 45 0.0176
ILE 45CYS 46 -0.0201
CYS 46ILE 47 -0.0084
ILE 47ILE 48 0.0132
ILE 48VAL 49 0.0030
VAL 49MET 50 -0.0081
MET 50LEU 51 0.0087
LEU 51LEU 52 0.0035

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.