CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  TRANSPORT PROTEIN 17-DEC-20 7L2L  ***

Normal Mode Analysis for ID 2602200446423711017

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.4878
mode 8 1.73 0.4448
mode 9 2.58 0.3231
mode 10 3.62 0.6084
mode 11 3.87 0.6164
mode 12 4.38 0.6336
mode 13 5.39 0.5594
mode 14 6.29 0.4107
mode 15 7.84 0.5308
mode 16 7.92 0.4124
mode 17 8.68 0.5697
mode 18 9.26 0.6021
mode 19 9.80 0.3505
mode 20 10.27 0.5109
mode 21 11.00 0.1940
mode 22 11.42 0.4743
mode 23 12.79 0.1985
mode 24 13.12 0.2478
mode 25 13.47 0.2048
mode 26 14.00 0.4757
mode 27 14.51 0.1257
mode 28 14.83 0.3125
mode 29 15.09 0.2075
mode 30 15.49 0.3131
mode 31 15.56 0.4673
mode 32 15.70 0.1971
mode 33 15.76 0.3608
mode 34 16.42 0.1901
mode 35 16.95 0.4328
mode 36 17.30 0.2023
mode 37 17.48 0.3196
mode 38 17.87 0.1633
mode 39 18.02 0.2511
mode 40 18.40 0.2796
mode 41 18.63 0.4728
mode 42 18.83 0.3201
mode 43 19.05 0.4006
mode 44 19.66 0.5190
mode 45 19.88 0.5613
mode 46 20.21 0.4090
mode 47 20.75 0.4489
mode 48 21.06 0.4119
mode 49 21.19 0.4348
mode 50 21.42 0.5213
mode 51 21.60 0.4919
mode 52 21.84 0.4165
mode 53 22.16 0.4961
mode 54 22.28 0.4124
mode 55 22.48 0.1392
mode 56 22.75 0.4356
mode 57 22.96 0.3486
mode 58 23.35 0.2167
mode 59 23.49 0.2318
mode 60 23.86 0.5258
mode 61 23.99 0.4263
mode 62 24.19 0.3224
mode 63 24.35 0.2864
mode 64 24.72 0.3682
mode 65 24.76 0.4956
mode 66 25.03 0.3514
mode 67 25.08 0.4137
mode 68 25.20 0.2718
mode 69 25.37 0.3369
mode 70 25.87 0.4608
mode 71 26.31 0.4710
mode 72 26.60 0.4793
mode 73 26.89 0.3728
mode 74 26.94 0.2817
mode 75 27.16 0.2874
mode 76 27.53 0.3909
mode 77 27.75 0.5866
mode 78 27.91 0.3213
mode 79 28.03 0.3771
mode 80 28.16 0.4845
mode 81 28.51 0.3762
mode 82 28.67 0.1956
mode 83 28.80 0.4051
mode 84 29.15 0.4467
mode 85 29.38 0.4068
mode 86 29.52 0.5067
mode 87 29.72 0.4386
mode 88 29.85 0.4050
mode 89 29.97 0.4354
mode 90 30.17 0.4291
mode 91 30.38 0.3785
mode 92 30.88 0.3678
mode 93 31.18 0.4275
mode 94 31.24 0.5044
mode 95 31.34 0.4269
mode 96 31.59 0.4446
mode 97 31.72 0.4000
mode 98 31.79 0.2940
mode 99 31.86 0.3102
mode 100 32.02 0.2535
mode 101 32.10 0.2968
mode 102 32.15 0.4148
mode 103 32.45 0.2509
mode 104 32.74 0.3692
mode 105 33.02 0.3511
mode 106 33.11 0.4810

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.