CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  MADHURJA truncatula medicago single  ***

CA distance fluctuations for 260222211152815844

---  normal mode 11  ---

This matrix displays the maximum distance fluctuations between all pairs of CA atoms and between the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Distance increases are plotted in blue and decreases in red for the strongest 10% of the residue pair distance changes. Every pixel corresponds to a single residue. Grey lines are drawn every 10 residues, yellow lines every 100 residues (counting from the upper left corner).

The following table indicates for every residue the two corresponding residues with the strongest CA distance fluctuations.

[HELP on distance fluctuations]

GD ok
largest increasereflargest decrease
VAL 31 0.03 MET 1 -0.42 ASN 177
VAL 31 0.05 ASP 2 -0.46 ASN 177
VAL 31 0.07 LEU 3 -0.48 ASN 177
VAL 31 0.08 ARG 4 -0.59 ASN 177
VAL 31 0.06 GLU 5 -0.56 ASN 177
VAL 31 0.05 SER 6 -0.52 ASN 177
VAL 31 0.09 ILE 7 -0.62 ASN 177
VAL 31 0.08 ALA 8 -0.67 ASN 177
VAL 31 0.05 ASN 9 -0.58 ASN 177
VAL 31 0.05 GLN 10 -0.58 ASN 177
VAL 31 0.09 THR 11 -0.70 ASN 177
VAL 31 0.05 ASN 12 -0.65 PHE 192
VAL 31 0.02 VAL 13 -0.61 PHE 192
VAL 31 0.04 SER 14 -0.65 PHE 192
LYS 19 0.07 LEU 15 -0.79 PHE 192
VAL 17 0.03 SER 16 -0.73 PHE 192
SER 16 0.03 VAL 17 -0.65 PHE 192
THR 11 0.06 ALA 18 -0.78 PHE 192
LEU 15 0.07 LYS 19 -0.86 PHE 192
LEU 148 0.04 HIS 20 -0.64 PHE 192
TYR 171 0.05 LEU 21 -0.56 THR 187
THR 11 0.06 PHE 22 -0.72 PHE 192
TYR 171 0.04 SER 23 -0.62 PHE 192
PHE 172 0.07 LYS 24 -0.46 THR 187
LYS 173 0.10 GLU 25 -0.49 THR 187
ASN 29 0.15 SER 26 -0.44 THR 187
LYS 173 0.10 ASP 27 -0.53 THR 187
LYS 173 0.17 ASN 28 -0.58 THR 187
GLY 174 0.16 ASN 29 -0.73 THR 187
PHE 172 0.13 ILE 30 -0.72 THR 187
ILE 79 0.13 VAL 31 -0.78 THR 187
ILE 79 0.08 PHE 32 -0.70 THR 187
PHE 32 0.07 SER 33 -0.66 THR 187
LEU 35 0.03 PRO 34 -0.61 THR 187
VAL 31 0.05 LEU 35 -0.56 THR 187
ASP 82 0.01 SER 36 -0.56 THR 187
ALA 169 0.02 LEU 37 -0.56 THR 187
PHE 59 0.01 GLN 38 -0.52 THR 187
PRO 85 0.01 VAL 39 -0.49 THR 187
LEU 41 0.02 VAL 40 -0.50 THR 187
LEU 152 0.02 LEU 41 -0.48 THR 187
PRO 154 0.02 SER 42 -0.45 THR 187
PRO 85 0.03 ILE 43 -0.44 THR 187
ILE 165 0.03 ILE 44 -0.44 THR 187
ILE 165 0.03 ALA 45 -0.42 THR 187
PRO 85 0.03 SER 46 -0.40 THR 187
LEU 164 0.04 GLY 47 -0.40 THR 187
LEU 164 0.05 SER 48 -0.40 THR 187
ARG 163 0.04 GLU 49 -0.37 THR 187
THR 162 0.04 GLY 50 -0.37 THR 187
SER 157 0.04 PRO 51 -0.38 THR 187
SER 157 0.04 THR 52 -0.41 THR 187
SER 157 0.03 GLN 53 -0.40 THR 187
SER 157 0.03 GLN 54 -0.40 PHE 192
SER 157 0.04 GLN 55 -0.43 PHE 192
SER 157 0.03 LEU 56 -0.44 THR 187
SER 157 0.02 PHE 57 -0.43 PHE 192
SER 157 0.02 ASN 58 -0.47 PHE 192
PRO 154 0.02 PHE 59 -0.50 PHE 192
PRO 154 0.01 LEU 60 -0.49 PHE 192
PRO 154 0.01 GLN 61 -0.49 PHE 192
SER 157 0.01 SER 62 -0.43 PHE 192
LEU 164 0.02 LYS 63 -0.40 PHE 192
LEU 164 0.02 SER 64 -0.38 THR 187
LEU 164 0.02 THR 65 -0.39 THR 187
SER 108 0.02 ASP 66 -0.37 THR 187
SER 108 0.02 HIS 67 -0.38 THR 187
SER 6 0.01 LEU 68 -0.41 THR 187
PRO 85 0.02 ASN 69 -0.40 THR 187
VAL 31 0.02 TYR 70 -0.38 THR 187
VAL 31 0.04 PHE 71 -0.41 THR 187
VAL 31 0.02 ALA 72 -0.44 THR 187
PRO 85 0.03 SER 73 -0.40 THR 187
VAL 31 0.06 GLN 74 -0.40 THR 187
VAL 31 0.07 LEU 75 -0.45 THR 187
VAL 31 0.05 VAL 76 -0.44 THR 187
VAL 31 0.06 SER 77 -0.40 THR 187
VAL 31 0.10 VAL 78 -0.40 THR 187
VAL 31 0.13 ILE 79 -0.45 THR 187
VAL 31 0.10 LEU 80 -0.48 THR 187
VAL 31 0.09 SER 81 -0.43 THR 187
ASN 28 0.10 ASP 82 -0.44 THR 187
ASN 28 0.11 ALA 83 -0.41 THR 187
ASN 177 0.25 SER 84 -0.45 ALA 182
ASN 177 0.31 PRO 85 -0.39 ALA 182
ASN 177 0.29 ALA 86 -0.38 ALA 182
ASN 177 0.43 GLY 87 -0.45 ALA 182
ASN 177 0.16 GLY 88 -0.46 ALA 182
ASN 28 0.14 PRO 89 -0.50 ALA 182
ALA 175 0.14 LEU 90 -0.51 THR 187
ASN 28 0.11 LEU 91 -0.52 THR 187
ASN 28 0.07 SER 92 -0.52 THR 187
ASN 28 0.04 PHE 93 -0.52 THR 187
PRO 85 0.05 VAL 94 -0.50 THR 187
PRO 85 0.05 ASP 95 -0.49 THR 187
PRO 85 0.06 GLY 96 -0.46 THR 187
PRO 85 0.05 VAL 97 -0.45 THR 187
PRO 85 0.05 TRP 98 -0.44 THR 187
PRO 85 0.05 VAL 99 -0.41 THR 187
PRO 85 0.04 ASP 100 -0.40 THR 187
PRO 85 0.05 GLN 101 -0.37 THR 187
PRO 85 0.05 THR 102 -0.36 THR 187
PRO 85 0.05 LEU 103 -0.37 THR 187
PRO 85 0.05 SER 104 -0.36 THR 187
PRO 85 0.05 LEU 105 -0.37 THR 187
PRO 85 0.05 GLN 106 -0.35 THR 187
PRO 85 0.06 PRO 107 -0.34 THR 187
PRO 85 0.06 SER 108 -0.34 THR 187
PRO 85 0.05 PHE 109 -0.37 THR 187
PRO 85 0.06 GLN 110 -0.37 THR 187
PRO 85 0.07 GLN 111 -0.35 THR 187
PRO 85 0.06 ILE 112 -0.37 THR 187
PRO 85 0.06 VAL 113 -0.40 THR 187
PRO 85 0.08 SER 114 -0.38 THR 187
PRO 85 0.08 THR 115 -0.36 THR 187
PRO 85 0.05 HIS 116 -0.39 THR 187
PRO 85 0.05 PHE 117 -0.42 THR 187
PRO 85 0.08 LYS 118 -0.40 THR 187
PRO 85 0.07 ALA 119 -0.43 THR 187
PRO 85 0.08 ALA 120 -0.42 THR 187
PRO 85 0.07 LEU 121 -0.40 THR 187
PRO 85 0.07 SER 122 -0.39 THR 187
PRO 85 0.06 SER 123 -0.38 THR 187
PRO 85 0.05 VAL 124 -0.39 THR 187
PRO 85 0.05 ASP 125 -0.38 THR 187
PRO 85 0.04 PHE 126 -0.41 THR 187
PRO 85 0.03 GLN 127 -0.39 THR 187
PRO 85 0.04 ASN 128 -0.37 THR 187
PRO 85 0.04 LYS 129 -0.39 THR 187
PRO 85 0.03 ALA 130 -0.43 THR 187
PRO 85 0.03 VAL 131 -0.43 THR 187
ALA 175 0.04 GLU 132 -0.41 THR 187
PRO 85 0.04 VAL 133 -0.43 THR 187
PRO 85 0.03 THR 134 -0.47 THR 187
ALA 175 0.05 ASN 135 -0.45 THR 187
ALA 175 0.06 GLU 136 -0.43 THR 187
PRO 85 0.04 VAL 137 -0.47 THR 187
ALA 175 0.05 ASN 138 -0.50 THR 187
ALA 175 0.09 SER 139 -0.45 THR 187
ALA 175 0.08 TRP 140 -0.45 THR 187
ALA 175 0.06 ALA 141 -0.51 THR 187
ALA 175 0.11 GLU 142 -0.50 THR 187
ALA 175 0.14 LYS 143 -0.44 THR 187
ALA 175 0.11 GLU 144 -0.45 THR 187
ALA 175 0.12 THR 145 -0.50 THR 187
ALA 175 0.20 ASN 146 -0.45 THR 187
ALA 175 0.18 GLY 147 -0.49 THR 187
ALA 175 0.14 LEU 148 -0.58 THR 187
ALA 175 0.07 ILE 149 -0.61 THR 187
ALA 175 0.08 LYS 150 -0.57 THR 187
ALA 175 0.03 GLU 151 -0.60 THR 187
THR 52 0.03 LEU 152 -0.60 THR 187
THR 52 0.03 LEU 153 -0.57 THR 187
THR 52 0.04 PRO 154 -0.59 THR 187
THR 52 0.03 LEU 155 -0.52 THR 187
THR 52 0.04 GLY 156 -0.51 THR 187
THR 52 0.04 SER 157 -0.54 THR 187
THR 52 0.04 VAL 158 -0.49 THR 187
THR 52 0.04 ASN 159 -0.45 THR 187
GLY 50 0.03 ASN 160 -0.41 THR 187
GLY 50 0.04 ALA 161 -0.42 THR 187
GLU 49 0.04 THR 162 -0.45 THR 187
GLU 49 0.04 ARG 163 -0.43 THR 187
SER 48 0.05 LEU 164 -0.45 THR 187
SER 48 0.04 ILE 165 -0.48 THR 187
PRO 85 0.03 PHE 166 -0.50 THR 187
PRO 85 0.03 ALA 167 -0.53 THR 187
PRO 85 0.03 ASN 168 -0.55 THR 187
PRO 85 0.02 ALA 169 -0.59 THR 187
ASN 28 0.05 LEU 170 -0.61 THR 187
ASN 28 0.11 TYR 171 -0.64 THR 187
ASN 28 0.15 PHE 172 -0.64 THR 187
ASN 28 0.17 LYS 173 -0.63 THR 187
ASN 28 0.16 GLY 174 -0.59 ALA 182
ASN 146 0.20 ALA 175 -0.63 ALA 182
GLY 87 0.28 TRP 176 -0.61 THR 188
GLY 87 0.43 ASN 177 -0.70 THR 11
GLY 87 0.29 ASP 178 -0.68 PHE 190
ASN 146 0.17 LYS 179 -0.52 THR 188
ASP 181 0.05 PHE 180 -0.63 THR 188
ASP 178 0.18 ASP 181 -0.44 THR 188
THR 187 0.06 ALA 182 -0.63 ALA 175
THR 187 0.24 SER 183 -0.49 LYS 173
ASP 178 0.12 LYS 184 -0.31 LYS 173
PHE 192 0.09 ARG 185 -0.47 LYS 173
SER 183 0.13 LYS 186 -0.48 LEU 148
SER 183 0.24 THR 187 -0.78 VAL 31
THR 187 0.05 THR 188 -0.63 PHE 180
THR 187 0.02 SER 189 -0.63 ASP 178
LYS 186 0.06 PHE 190 -0.68 ASP 178
LYS 186 0.05 THR 191 -0.71 LEU 15
LYS 186 0.09 PHE 192 -0.86 LYS 19

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.