CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  ENDOCYTOSIS 29-JUN-09 3I2W  ***

<R2> analysis for 2602230445411017275

---  normal mode 105  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1592
SER 140.0288
ASP 150.0474
SER 160.0272
PHE 170.0080
TRP 180.0084
GLU 190.0081
PRO 200.0077
GLY 210.0142
ASN 220.0116
TYR 230.0064
LYS 240.0088
ARG 250.0093
THR 260.0051
THR 270.0026
LYS 280.0068
ARG 290.0066
ILE 300.0063
GLU 310.0113
ASP 320.0098
GLY 330.0126
TYR 340.0134
LYS 350.0104
LEU 360.0083
CYS 370.0089
ASN 380.0092
ASP 390.0090
LEU 400.0055
GLN 410.0079
GLN 420.0116
LEU 430.0121
ILE 440.0103
GLN 450.0077
GLU 460.0114
ARG 470.0099
ALA 480.0112
ASP 490.0133
ILE 500.0060
GLU 510.0069
LYS 520.0067
GLY 530.0112
TYR 540.0090
ALA 550.0146
LYS 560.0313
SER 570.0224
LEU 580.0051
ARG 590.0056
THR 600.0145
TRP 610.0153
SER 620.0165
LYS 630.0206
LYS 640.0235
TRP 650.0250
GLY 660.0235
GLU 670.0206
LEU 680.0123
ILE 690.0109
GLU 700.0095
LYS 710.0151
GLY 720.0082
PRO 730.0142
GLU 740.0091
TYR 750.0106
GLY 760.0112
THR 770.0102
THR 780.0097
GLU 790.0099
ALA 800.0091
ALA 810.0079
TRP 820.0038
LYS 830.0094
GLY 840.0098
VAL 850.0087
LEU 860.0102
THR 870.0106
GLU 880.0070
SER 890.0033
GLU 900.0061
ARG 910.0095
ILE 920.0074
SER 930.0095
ASP 940.0128
VAL 950.0037
HIS 960.0060
LYS 980.0148
ILE 990.0092
LYS 1000.0157
ASP 1010.0250
ASN 1020.0181
LEU 1030.0162
CYS 1040.0202
ASN 1050.0209
ASP 1060.0159
VAL 1070.0109
ASN 1080.0070
SER 1090.0068
GLN 1100.0037
ILE 1110.0033
LYS 1120.0049
THR 1130.0077
TRP 1140.0085
GLN 1150.0095
LYS 1160.0162
GLU 1170.0227
ASN 1180.0177
TYR 1190.0212
HIS 1200.0208
HIS 1210.0196
THR 1220.0282
LEU 1230.0225
GLN 1250.0178
ILE 1260.0209
LYS 1270.0231
GLU 1280.0148
ARG 1290.0111
LYS 1300.0076
ASP 1310.0040
LEU 1320.0054
GLU 1330.0054
ASP 1340.0068
LEU 1350.0089
PHE 1360.0072
LYS 1370.0068
LYS 1380.0130
ALA 1390.0118
GLN 1400.0055
LYS 1410.0071
PRO 1420.0062
TRP 1430.0025
ALA 1440.0029
LYS 1450.0056
LEU 1460.0024
LEU 1470.0021
ALA 1480.0043
LYS 1490.0043
VAL 1500.0037
GLU 1510.0044
LYS 1520.0050
ALA 1530.0033
LYS 1540.0024
ALA 1550.0051
ASP 1560.0046
TYR 1570.0049
HIS 1580.0071
SER 1590.0079
ALA 1600.0048
CYS 1610.0025
LYS 1620.0027
THR 1630.0041
GLU 1640.0031
ARG 1650.0044
SER 1660.0061
ALA 1670.0053
THR 1680.0183
HIS 1890.0049
ASP 1900.0039
ARG 1910.0050
VAL 1920.0055
GLN 1930.0061
LYS 1940.0062
THR 1950.0029
LYS 1960.0036
ASP 1970.0016
GLN 1980.0056
VAL 1990.0063
GLN 2000.0092
LYS 2010.0098
CYS 2020.0068
ARG 2030.0046
GLU 2040.0047
LYS 2050.0091
TYR 2060.0057
GLU 2070.0080
GLN 2080.0120
ALA 2090.0059
ILE 2100.0057
ALA 2110.0082
GLU 2120.0055
ILE 2130.0057
THR 2140.0101
LYS 2150.0136
TYR 2160.0054
ASN 2170.0035
SER 2180.0066
VAL 2190.0089
TYR 2200.0066
ILE 2210.0086
GLU 2220.0145
ASP 2230.0059
THR 2250.0043
SER 2260.0019
VAL 2270.0052
PHE 2280.0026
GLU 2290.0059
LYS 2300.0082
CYS 2310.0045
GLN 2320.0052
THR 2330.0084
PHE 2340.0058
GLU 2350.0042
LYS 2360.0064
THR 2370.0059
ARG 2380.0048
LEU 2390.0044
GLN 2400.0072
PHE 2410.0040
PHE 2420.0029
LYS 2430.0097
GLU 2440.0107
ILE 2450.0085
LEU 2460.0085
PHE 2470.0088
ASN 2480.0092
VAL 2490.0092
HIS 2500.0079
SER 2510.0068
CYS 2520.0080
LEU 2530.0085
ASP 2540.0068
LEU 2550.0048
THR 2560.0083
LYS 2570.0085
VAL 2580.0159
GLN 2590.0133
SER 2600.0117
LEU 2610.0068
PRO 2620.0063
GLN 2630.0095
ILE 2640.0065
TYR 2650.0081
GLU 2660.0158
GLU 2670.0107
PHE 2680.0071
SER 2690.0111
HIS 2700.0185
THR 2710.0152
ILE 2720.0072
ASN 2730.0124
ASN 2740.0157
ALA 2750.0133
ASP 2760.0131
GLN 2770.0109
GLN 2780.0105
LYS 2790.0099
ASP 2800.0089
LEU 2810.0066
LYS 2820.0080
TRP 2830.0065
TRP 2840.0038
SER 2850.0035
ASN 2860.0049
ASN 2870.0042
HIS 2880.0028
GLY 2890.0024
ILE 2900.0038
ASN 2910.0049
ALA 2930.0203
ASN 2950.0340
TRP 2960.0153
PRO 2970.0180
SER 2980.0045
PHE 2990.0012
VAL 3000.0026
GLU 3010.0151
TYR 3020.0103
THR 3030.0166
SER 140.0251
ASP 150.0239
SER 160.0081
PHE 170.0025
TRP 180.0040
GLU 190.0049
PRO 200.0080
GLY 210.0072
ASN 220.0050
TYR 230.0083
LYS 240.0100
ARG 250.0087
THR 260.0060
THR 270.0052
LYS 280.0076
ARG 290.0068
ILE 300.0070
GLU 310.0100
ASP 320.0076
GLY 330.0093
TYR 340.0093
LYS 350.0054
LEU 360.0037
CYS 370.0022
ASN 380.0068
ASP 390.0116
LEU 400.0122
GLN 410.0125
GLN 420.0160
LEU 430.0206
ILE 440.0174
GLN 450.0105
GLU 460.0173
ARG 470.0125
ALA 480.0087
ASP 490.0107
ILE 500.0096
GLU 510.0052
LYS 520.0058
GLY 530.0063
TYR 540.0080
ALA 550.0073
LYS 560.0040
SER 570.0073
LEU 580.0035
ARG 590.0100
THR 600.0189
TRP 610.0168
SER 620.0193
LYS 630.0298
LYS 640.0294
TRP 650.0205
GLY 660.0255
GLU 670.0199
LEU 680.0120
ILE 690.0172
GLU 700.0309
LYS 710.0256
GLY 720.0156
PRO 730.0167
GLU 740.0110
TYR 750.0096
GLY 760.0083
THR 770.0112
THR 780.0112
GLU 790.0125
ALA 800.0104
ALA 810.0086
TRP 820.0082
LYS 830.0087
GLY 840.0083
VAL 850.0083
LEU 860.0062
THR 870.0057
GLU 880.0048
SER 890.0058
GLU 900.0120
ARG 910.0183
ILE 920.0179
SER 930.0166
ASP 940.0225
VAL 950.0197
HIS 960.0164
LYS 980.0030
ILE 990.0068
LYS 1000.0032
ASP 1010.0110
ASN 1020.0181
LEU 1030.0173
CYS 1040.0156
ASN 1050.0293
ASP 1060.0375
VAL 1070.0273
ASN 1080.0172
SER 1090.0212
GLN 1100.0200
ILE 1110.0152
LYS 1120.0120
THR 1130.0108
TRP 1140.0061
GLN 1150.0024
LYS 1160.0055
GLU 1170.0075
ASN 1180.0115
TYR 1190.0170
HIS 1200.0174
HIS 1210.0193
THR 1220.0302
LEU 1230.0235
GLN 1250.0133
ILE 1260.0166
LYS 1270.0179
GLU 1280.0137
ARG 1290.0093
LYS 1300.0069
ASP 1310.0071
LEU 1320.0072
GLU 1330.0094
ASP 1340.0090
LEU 1350.0108
PHE 1360.0099
LYS 1370.0099
LYS 1380.0142
ALA 1390.0128
GLN 1400.0105
LYS 1410.0130
PRO 1420.0097
TRP 1430.0060
ALA 1440.0090
LYS 1450.0112
LEU 1460.0046
LEU 1470.0042
ALA 1480.0052
LYS 1490.0059
VAL 1500.0042
GLU 1510.0070
LYS 1520.0126
ALA 1530.0096
LYS 1540.0071
ALA 1550.0068
ASP 1560.0043
TYR 1570.0028
HIS 1580.0051
SER 1590.0078
ALA 1600.0067
CYS 1610.0077
LYS 1620.0084
THR 1630.0084
GLU 1640.0062
ARG 1650.0097
SER 1660.0094
ALA 1670.0204
THR 1680.0188
ASN 1690.0089
GLN 1700.0382
GLU 1710.0376
ARG 1720.0148
ASN 1730.0263
ALA 1740.0287
ASN 1750.0157
ALA 1760.0164
ASP 1770.0171
SER 1780.0080
SER 1790.0093
LEU 1800.0125
SER 1810.0149
PRO 1820.0100
ASP 1830.0096
GLN 1840.0331
VAL 1850.0269
LYS 1860.0192
LYS 1870.0121
HIS 1890.0207
ASP 1900.0178
ARG 1910.0099
VAL 1920.0192
GLN 1930.0061
LYS 1940.0135
THR 1950.0099
LYS 1960.0023
ASP 1970.0123
GLN 1980.0102
VAL 1990.0062
GLN 2000.0102
LYS 2010.0090
CYS 2020.0061
ARG 2030.0081
GLU 2040.0099
LYS 2050.0096
TYR 2060.0072
GLU 2070.0078
GLN 2080.0074
ALA 2090.0078
ILE 2100.0102
ALA 2110.0108
GLU 2120.0098
ILE 2130.0096
THR 2140.0102
LYS 2150.0132
TYR 2160.0067
ASN 2170.0042
SER 2180.0089
VAL 2190.0081
TYR 2200.0050
ILE 2210.0068
GLU 2220.0083
ASP 2230.0061
THR 2250.0037
SER 2260.0038
VAL 2270.0017
PHE 2280.0018
GLU 2290.0035
LYS 2300.0031
CYS 2310.0028
GLN 2320.0041
THR 2330.0077
PHE 2340.0055
GLU 2350.0045
LYS 2360.0057
THR 2370.0065
ARG 2380.0061
LEU 2390.0063
GLN 2400.0081
PHE 2410.0079
PHE 2420.0071
LYS 2430.0099
GLU 2440.0060
ILE 2450.0135
LEU 2460.0065
PHE 2470.0061
ASN 2480.0090
VAL 2490.0099
HIS 2500.0085
SER 2510.0117
CYS 2520.0126
LEU 2530.0134
ASP 2540.0163
LEU 2550.0167
THR 2560.0209
LYS 2570.0174
VAL 2580.0114
GLN 2590.0071
SER 2600.0146
LEU 2610.0098
PRO 2620.0105
GLN 2630.0209
ILE 2640.0152
TYR 2650.0122
GLU 2660.0190
GLU 2670.0160
PHE 2680.0144
SER 2690.0126
HIS 2700.0154
THR 2710.0173
ILE 2720.0142
ASN 2730.0145
ASN 2740.0169
ALA 2750.0176
ASP 2760.0162
GLN 2770.0120
GLN 2780.0059
LYS 2790.0124
ASP 2800.0092
LEU 2810.0023
LYS 2820.0192
TRP 2830.0175
TRP 2840.0069
SER 2850.0110
ASN 2860.0150
ASN 2870.0097
HIS 2880.0062
GLY 2890.0070
ILE 2900.0132
ASN 2910.0297
ALA 2930.1592
ASN 2950.0237
TRP 2960.0132
PRO 2970.0133
SER 2980.0158

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.