CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  ENDOCYTOSIS 29-JUN-09 3I2W  ***

<R2> analysis for 2602230445411017275

---  normal mode 22  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0497
SER 140.0119
ASP 150.0110
SER 160.0128
PHE 170.0127
TRP 180.0146
GLU 190.0118
PRO 200.0111
GLY 210.0094
ASN 220.0099
TYR 230.0112
LYS 240.0084
ARG 250.0078
THR 260.0086
THR 270.0075
LYS 280.0061
ARG 290.0057
ILE 300.0055
GLU 310.0060
ASP 320.0051
GLY 330.0057
TYR 340.0074
LYS 350.0063
LEU 360.0063
CYS 370.0083
ASN 380.0079
ASP 390.0067
LEU 400.0080
GLN 410.0087
GLN 420.0074
LEU 430.0070
ILE 440.0077
GLN 450.0074
GLU 460.0060
ARG 470.0058
ALA 480.0061
ASP 490.0054
ILE 500.0046
GLU 510.0046
LYS 520.0046
GLY 530.0052
TYR 540.0044
ALA 550.0053
LYS 560.0064
SER 570.0055
LEU 580.0057
ARG 590.0069
THR 600.0066
TRP 610.0060
SER 620.0075
LYS 630.0081
LYS 640.0068
TRP 650.0071
GLY 660.0085
GLU 670.0082
LEU 680.0071
ILE 690.0080
GLU 700.0094
LYS 710.0079
GLY 720.0075
PRO 730.0087
GLU 740.0104
TYR 750.0116
GLY 760.0126
THR 770.0136
THR 780.0120
GLU 790.0116
ALA 800.0133
ALA 810.0130
TRP 820.0112
LYS 830.0105
GLY 840.0114
VAL 850.0100
LEU 860.0088
THR 870.0101
GLU 880.0092
SER 890.0072
GLU 900.0082
ARG 910.0083
ILE 920.0061
SER 930.0062
ASP 940.0069
VAL 950.0047
HIS 960.0047
LYS 980.0071
ILE 990.0072
LYS 1000.0067
ASP 1010.0085
ASN 1020.0100
LEU 1030.0094
CYS 1040.0096
ASN 1050.0116
ASP 1060.0129
VAL 1070.0123
ASN 1080.0111
SER 1090.0130
GLN 1100.0138
ILE 1110.0116
LYS 1120.0122
THR 1130.0143
TRP 1140.0125
GLN 1150.0112
LYS 1160.0135
GLU 1170.0136
ASN 1180.0106
TYR 1190.0105
HIS 1200.0127
HIS 1210.0144
THR 1220.0166
LEU 1230.0214
GLN 1250.0146
ILE 1260.0109
LYS 1270.0100
GLU 1280.0064
ARG 1290.0070
LYS 1300.0105
ASP 1310.0094
LEU 1320.0097
GLU 1330.0107
ASP 1340.0135
LEU 1350.0153
PHE 1360.0146
LYS 1370.0160
LYS 1380.0204
ALA 1390.0213
GLN 1400.0181
LYS 1410.0197
PRO 1420.0221
TRP 1430.0173
ALA 1440.0143
LYS 1450.0166
LEU 1460.0129
LEU 1470.0085
ALA 1480.0140
LYS 1490.0131
VAL 1500.0091
GLU 1510.0135
LYS 1520.0201
ALA 1530.0198
LYS 1540.0185
ALA 1550.0213
ASP 1560.0245
TYR 1570.0246
HIS 1580.0224
SER 1590.0211
ALA 1600.0222
CYS 1610.0211
LYS 1620.0131
THR 1630.0069
GLU 1640.0105
ARG 1650.0215
SER 1660.0225
ALA 1670.0245
THR 1680.0381
HIS 1890.0476
ASP 1900.0363
ARG 1910.0258
VAL 1920.0197
GLN 1930.0098
LYS 1940.0122
THR 1950.0113
LYS 1960.0230
ASP 1970.0288
GLN 1980.0274
VAL 1990.0290
GLN 2000.0350
LYS 2010.0345
CYS 2020.0289
ARG 2030.0274
GLU 2040.0284
LYS 2050.0250
TYR 2060.0193
GLU 2070.0145
GLN 2080.0124
ALA 2090.0115
ILE 2100.0047
ALA 2110.0067
GLU 2120.0115
ILE 2130.0131
THR 2140.0161
LYS 2150.0216
TYR 2160.0228
ASN 2170.0219
SER 2180.0284
VAL 2190.0284
TYR 2200.0235
ILE 2210.0247
GLU 2220.0280
ASP 2230.0246
THR 2250.0201
SER 2260.0198
VAL 2270.0157
PHE 2280.0131
GLU 2290.0139
LYS 2300.0110
CYS 2310.0071
GLN 2320.0078
THR 2330.0064
PHE 2340.0048
GLU 2350.0049
LYS 2360.0060
THR 2370.0075
ARG 2380.0073
LEU 2390.0076
GLN 2400.0098
PHE 2410.0104
PHE 2420.0099
LYS 2430.0113
GLU 2440.0131
ILE 2450.0118
LEU 2460.0111
PHE 2470.0131
ASN 2480.0130
VAL 2490.0107
HIS 2500.0111
SER 2510.0118
CYS 2520.0095
LEU 2530.0086
ASP 2540.0094
LEU 2550.0067
THR 2560.0080
LYS 2570.0080
VAL 2580.0061
GLN 2590.0054
SER 2600.0076
LEU 2610.0063
PRO 2620.0082
GLN 2630.0105
ILE 2640.0100
TYR 2650.0103
GLU 2660.0129
GLU 2670.0136
PHE 2680.0125
SER 2690.0141
HIS 2700.0166
THR 2710.0152
ILE 2720.0142
ASN 2730.0164
ASN 2740.0164
ALA 2750.0143
ASP 2760.0132
GLN 2770.0107
GLN 2780.0101
LYS 2790.0108
ASP 2800.0103
LEU 2810.0079
LYS 2820.0083
TRP 2830.0110
TRP 2840.0098
SER 2850.0098
ASN 2860.0130
ASN 2870.0144
HIS 2880.0128
GLY 2890.0117
ILE 2900.0125
ASN 2910.0142
ALA 2930.0198
ASN 2950.0225
TRP 2960.0196
PRO 2970.0159
SER 2980.0177
PHE 2990.0126
VAL 3000.0189
GLU 3010.0172
TYR 3020.0220
THR 3030.0309
SER 140.0193
ASP 150.0165
SER 160.0155
PHE 170.0132
TRP 180.0140
GLU 190.0127
PRO 200.0091
GLY 210.0073
ASN 220.0095
TYR 230.0090
LYS 240.0080
ARG 250.0092
THR 260.0081
THR 270.0069
LYS 280.0076
ARG 290.0075
ILE 300.0064
GLU 310.0066
ASP 320.0074
GLY 330.0072
TYR 340.0069
LYS 350.0073
LEU 360.0077
CYS 370.0076
ASN 380.0070
ASP 390.0070
LEU 400.0076
GLN 410.0069
GLN 420.0062
LEU 430.0064
ILE 440.0064
GLN 450.0060
GLU 460.0054
ARG 470.0052
ALA 480.0052
ASP 490.0047
ILE 500.0043
GLU 510.0041
LYS 520.0042
GLY 530.0037
TYR 540.0039
ALA 550.0046
LYS 560.0036
SER 570.0036
LEU 580.0045
ARG 590.0042
THR 600.0037
TRP 610.0046
SER 620.0050
LYS 630.0045
LYS 640.0045
TRP 650.0054
GLY 660.0057
GLU 670.0051
LEU 680.0048
ILE 690.0053
GLU 700.0056
LYS 710.0049
GLY 720.0044
PRO 730.0044
GLU 740.0058
TYR 750.0075
GLY 760.0093
THR 770.0095
THR 780.0081
GLU 790.0078
ALA 800.0094
ALA 810.0100
TRP 820.0088
LYS 830.0078
GLY 840.0095
VAL 850.0091
LEU 860.0072
THR 870.0082
GLU 880.0082
SER 890.0061
GLU 900.0065
ARG 910.0075
ILE 920.0057
SER 930.0051
ASP 940.0063
VAL 950.0050
HIS 960.0045
LYS 980.0062
ILE 990.0054
LYS 1000.0057
ASP 1010.0074
ASN 1020.0077
LEU 1030.0073
CYS 1040.0077
ASN 1050.0094
ASP 1060.0099
VAL 1070.0094
ASN 1080.0084
SER 1090.0095
GLN 1100.0103
ILE 1110.0091
LYS 1120.0086
THR 1130.0095
TRP 1140.0095
GLN 1150.0083
LYS 1160.0087
GLU 1170.0098
ASN 1180.0087
TYR 1190.0070
HIS 1200.0073
HIS 1210.0069
THR 1220.0072
LEU 1230.0076
GLN 1250.0055
ILE 1260.0053
LYS 1270.0055
GLU 1280.0054
ARG 1290.0056
LYS 1300.0050
ASP 1310.0047
LEU 1320.0055
GLU 1330.0060
ASP 1340.0060
LEU 1350.0071
PHE 1360.0080
LYS 1370.0075
LYS 1380.0096
ALA 1390.0116
GLN 1400.0108
LYS 1410.0101
PRO 1420.0139
TRP 1430.0125
ALA 1440.0064
LYS 1450.0092
LEU 1460.0104
LEU 1470.0042
ALA 1480.0059
LYS 1490.0113
VAL 1500.0048
GLU 1510.0130
LYS 1520.0222
ALA 1530.0167
LYS 1540.0163
ALA 1550.0275
ASP 1560.0285
TYR 1570.0218
HIS 1580.0256
SER 1590.0332
ALA 1600.0284
CYS 1610.0226
LYS 1620.0290
THR 1630.0310
GLU 1640.0238
ARG 1650.0228
SER 1660.0254
ALA 1670.0210
THR 1680.0182
ASN 1690.0163
GLN 1700.0122
GLU 1710.0119
ARG 1720.0156
ASN 1730.0191
ALA 1740.0143
ASN 1750.0112
ALA 1760.0192
ASP 1770.0305
SER 1780.0338
SER 1790.0497
LEU 1800.0421
SER 1810.0473
PRO 1820.0426
ASP 1830.0379
GLN 1840.0279
VAL 1850.0180
LYS 1860.0209
LYS 1870.0119
HIS 1890.0129
ASP 1900.0199
ARG 1910.0190
VAL 1920.0206
GLN 1930.0234
LYS 1940.0253
THR 1950.0261
LYS 1960.0231
ASP 1970.0247
GLN 1980.0269
VAL 1990.0196
GLN 2000.0167
LYS 2010.0225
CYS 2020.0189
ARG 2030.0103
GLU 2040.0138
LYS 2050.0163
TYR 2060.0085
GLU 2070.0089
GLN 2080.0153
ALA 2090.0107
ILE 2100.0109
ALA 2110.0187
GLU 2120.0194
ILE 2130.0164
THR 2140.0223
LYS 2150.0275
TYR 2160.0219
ASN 2170.0215
SER 2180.0256
VAL 2190.0222
TYR 2200.0178
ILE 2210.0197
GLU 2220.0197
ASP 2230.0152
THR 2250.0126
SER 2260.0102
VAL 2270.0076
PHE 2280.0075
GLU 2290.0069
LYS 2300.0047
CYS 2310.0054
GLN 2320.0063
THR 2330.0053
PHE 2340.0070
GLU 2350.0075
LYS 2360.0086
THR 2370.0096
ARG 2380.0090
LEU 2390.0101
GLN 2400.0115
PHE 2410.0110
PHE 2420.0107
LYS 2430.0126
GLU 2440.0130
ILE 2450.0113
LEU 2460.0114
PHE 2470.0128
ASN 2480.0119
VAL 2490.0100
HIS 2500.0104
SER 2510.0106
CYS 2520.0085
LEU 2530.0074
ASP 2540.0079
LEU 2550.0057
THR 2560.0063
LYS 2570.0074
VAL 2580.0068
GLN 2590.0086
SER 2600.0099
LEU 2610.0074
PRO 2620.0092
GLN 2630.0114
ILE 2640.0102
TYR 2650.0108
GLU 2660.0129
GLU 2670.0125
PHE 2680.0114
SER 2690.0133
HIS 2700.0141
THR 2710.0122
ILE 2720.0121
ASN 2730.0139
ASN 2740.0129
ALA 2750.0111
ASP 2760.0092
GLN 2770.0067
GLN 2780.0067
LYS 2790.0098
ASP 2800.0084
LEU 2810.0072
LYS 2820.0112
TRP 2830.0125
TRP 2840.0107
SER 2850.0132
ASN 2860.0161
ASN 2870.0148
HIS 2880.0126
GLY 2890.0141
ILE 2900.0170
ASN 2910.0191
ALA 2930.0162
ASN 2950.0164
TRP 2960.0134
PRO 2970.0093
SER 2980.0124

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.