CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  ENDOCYTOSIS 29-JUN-09 3I2W  ***

<R2> analysis for 2602230445411017275

---  normal mode 32  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0506
SER 140.0276
ASP 150.0230
SER 160.0210
PHE 170.0179
TRP 180.0202
GLU 190.0230
PRO 200.0234
GLY 210.0208
ASN 220.0187
TYR 230.0140
LYS 240.0126
ARG 250.0121
THR 260.0063
THR 270.0029
LYS 280.0068
ARG 290.0065
ILE 300.0072
GLU 310.0105
ASP 320.0087
GLY 330.0085
TYR 340.0109
LYS 350.0092
LEU 360.0086
CYS 370.0069
ASN 380.0071
ASP 390.0096
LEU 400.0076
GLN 410.0084
GLN 420.0121
LEU 430.0119
ILE 440.0116
GLN 450.0144
GLU 460.0159
ARG 470.0145
ALA 480.0154
ASP 490.0172
ILE 500.0146
GLU 510.0139
LYS 520.0153
GLY 530.0099
TYR 540.0085
ALA 550.0098
LYS 560.0068
SER 570.0034
LEU 580.0052
ARG 590.0075
THR 600.0059
TRP 610.0067
SER 620.0093
LYS 630.0122
LYS 640.0126
TRP 650.0129
GLY 660.0144
GLU 670.0168
LEU 680.0149
ILE 690.0128
GLU 700.0142
LYS 710.0151
GLY 720.0109
PRO 730.0085
GLU 740.0075
TYR 750.0091
GLY 760.0117
THR 770.0105
THR 780.0089
GLU 790.0102
ALA 800.0102
ALA 810.0095
TRP 820.0099
LYS 830.0101
GLY 840.0086
VAL 850.0074
LEU 860.0085
THR 870.0094
GLU 880.0070
SER 890.0058
GLU 900.0088
ARG 910.0099
ILE 920.0085
SER 930.0086
ASP 940.0115
VAL 950.0126
HIS 960.0117
LYS 980.0154
ILE 990.0143
LYS 1000.0158
ASP 1010.0173
ASN 1020.0150
LEU 1030.0138
CYS 1040.0154
ASN 1050.0168
ASP 1060.0134
VAL 1070.0093
ASN 1080.0099
SER 1090.0094
GLN 1100.0053
ILE 1110.0053
LYS 1120.0068
THR 1130.0043
TRP 1140.0058
GLN 1150.0081
LYS 1160.0111
GLU 1170.0106
ASN 1180.0118
TYR 1190.0161
HIS 1200.0220
HIS 1210.0255
THR 1220.0334
LEU 1230.0433
GLN 1250.0243
ILE 1260.0182
LYS 1270.0176
GLU 1280.0105
ARG 1290.0068
LYS 1300.0069
ASP 1310.0075
LEU 1320.0054
GLU 1330.0051
ASP 1340.0097
LEU 1350.0132
PHE 1360.0144
LYS 1370.0189
LYS 1380.0208
ALA 1390.0209
GLN 1400.0235
LYS 1410.0265
PRO 1420.0256
TRP 1430.0236
ALA 1440.0265
LYS 1450.0279
LEU 1460.0198
LEU 1470.0196
ALA 1480.0246
LYS 1490.0153
VAL 1500.0102
GLU 1510.0203
LYS 1520.0157
ALA 1530.0108
LYS 1540.0206
ALA 1550.0203
ASP 1560.0167
TYR 1570.0209
HIS 1580.0251
SER 1590.0241
ALA 1600.0190
CYS 1610.0155
LYS 1620.0276
THR 1630.0291
GLU 1640.0227
ARG 1650.0319
SER 1660.0426
ALA 1670.0344
THR 1680.0427
HIS 1890.0397
ASP 1900.0199
ARG 1910.0134
VAL 1920.0199
GLN 1930.0187
LYS 1940.0175
THR 1950.0105
LYS 1960.0088
ASP 1970.0120
GLN 1980.0148
VAL 1990.0197
GLN 2000.0211
LYS 2010.0195
CYS 2020.0186
ARG 2030.0274
GLU 2040.0288
LYS 2050.0184
TYR 2060.0176
GLU 2070.0264
GLN 2080.0234
ALA 2090.0098
ILE 2100.0083
ALA 2110.0165
GLU 2120.0155
ILE 2130.0096
THR 2140.0048
LYS 2150.0129
TYR 2160.0166
ASN 2170.0146
SER 2180.0153
VAL 2190.0192
TYR 2200.0199
ILE 2210.0178
GLU 2220.0154
ASP 2230.0174
THR 2250.0133
SER 2260.0124
VAL 2270.0111
PHE 2280.0081
GLU 2290.0076
LYS 2300.0065
CYS 2310.0020
GLN 2320.0022
THR 2330.0061
PHE 2340.0072
GLU 2350.0069
LYS 2360.0074
THR 2370.0084
ARG 2380.0086
LEU 2390.0084
GLN 2400.0080
PHE 2410.0069
PHE 2420.0069
LYS 2430.0078
GLU 2440.0063
ILE 2450.0054
LEU 2460.0061
PHE 2470.0057
ASN 2480.0066
VAL 2490.0085
HIS 2500.0081
SER 2510.0085
CYS 2520.0103
LEU 2530.0107
ASP 2540.0103
LEU 2550.0102
THR 2560.0104
LYS 2570.0113
VAL 2580.0110
GLN 2590.0124
SER 2600.0107
LEU 2610.0091
PRO 2620.0098
GLN 2630.0107
ILE 2640.0079
TYR 2650.0058
GLU 2660.0070
GLU 2670.0085
PHE 2680.0066
SER 2690.0059
HIS 2700.0066
THR 2710.0078
ILE 2720.0079
ASN 2730.0075
ASN 2740.0080
ALA 2750.0091
ASP 2760.0100
GLN 2770.0078
GLN 2780.0093
LYS 2790.0134
ASP 2800.0107
LEU 2810.0101
LYS 2820.0148
TRP 2830.0152
TRP 2840.0134
SER 2850.0151
ASN 2860.0175
ASN 2870.0167
HIS 2880.0148
GLY 2890.0153
ILE 2900.0162
ASN 2910.0176
ALA 2930.0130
ASN 2950.0080
TRP 2960.0060
PRO 2970.0095
SER 2980.0173
PHE 2990.0164
VAL 3000.0167
GLU 3010.0150
TYR 3020.0132
THR 3030.0177
SER 140.0202
ASP 150.0204
SER 160.0165
PHE 170.0152
TRP 180.0135
GLU 190.0142
PRO 200.0156
GLY 210.0174
ASN 220.0170
TYR 230.0156
LYS 240.0154
ARG 250.0154
THR 260.0132
THR 270.0114
LYS 280.0104
ARG 290.0081
ILE 300.0061
GLU 310.0047
ASP 320.0067
GLY 330.0063
TYR 340.0058
LYS 350.0083
LEU 360.0092
CYS 370.0090
ASN 380.0107
ASP 390.0111
LEU 400.0102
GLN 410.0099
GLN 420.0111
LEU 430.0102
ILE 440.0080
GLN 450.0079
GLU 460.0075
ARG 470.0044
ALA 480.0027
ASP 490.0025
ILE 500.0030
GLU 510.0040
LYS 520.0028
GLY 530.0090
TYR 540.0099
ALA 550.0097
LYS 560.0123
SER 570.0138
LEU 580.0130
ARG 590.0134
THR 600.0158
TRP 610.0150
SER 620.0136
LYS 630.0162
LYS 640.0171
TRP 650.0144
GLY 660.0143
GLU 670.0172
LEU 680.0150
ILE 690.0123
GLU 700.0157
LYS 710.0175
GLY 720.0108
PRO 730.0104
GLU 740.0080
TYR 750.0089
GLY 760.0098
THR 770.0108
THR 780.0091
GLU 790.0095
ALA 800.0105
ALA 810.0074
TRP 820.0071
LYS 830.0101
GLY 840.0081
VAL 850.0083
LEU 860.0114
THR 870.0110
GLU 880.0099
SER 890.0111
GLU 900.0117
ARG 910.0108
ILE 920.0101
SER 930.0105
ASP 940.0090
VAL 950.0086
HIS 960.0078
LYS 980.0019
ILE 990.0022
LYS 1000.0013
ASP 1010.0036
ASN 1020.0035
LEU 1030.0050
CYS 1040.0067
ASN 1050.0075
ASP 1060.0071
VAL 1070.0080
ASN 1080.0091
SER 1090.0091
GLN 1100.0088
ILE 1110.0091
LYS 1120.0097
THR 1130.0082
TRP 1140.0068
GLN 1150.0070
LYS 1160.0065
GLU 1170.0050
ASN 1180.0030
TYR 1190.0023
HIS 1200.0034
HIS 1210.0037
THR 1220.0067
LEU 1230.0083
GLN 1250.0044
ILE 1260.0030
LYS 1270.0049
GLU 1280.0057
ARG 1290.0079
LYS 1300.0092
ASP 1310.0113
LEU 1320.0130
GLU 1330.0144
ASP 1340.0149
LEU 1350.0159
PHE 1360.0160
LYS 1370.0165
LYS 1380.0162
ALA 1390.0147
GLN 1400.0140
LYS 1410.0161
PRO 1420.0139
TRP 1430.0114
ALA 1440.0124
LYS 1450.0150
LEU 1460.0123
LEU 1470.0069
ALA 1480.0087
LYS 1490.0152
VAL 1500.0143
GLU 1510.0126
LYS 1520.0166
ALA 1530.0162
LYS 1540.0163
ALA 1550.0184
ASP 1560.0171
TYR 1570.0130
HIS 1580.0118
SER 1590.0125
ALA 1600.0102
CYS 1610.0036
LYS 1620.0044
THR 1630.0055
GLU 1640.0110
ARG 1650.0111
SER 1660.0088
ALA 1670.0125
THR 1680.0179
ASN 1690.0160
GLN 1700.0137
GLU 1710.0144
ARG 1720.0206
ASN 1730.0183
ALA 1740.0134
ASN 1750.0059
ALA 1760.0177
ASP 1770.0327
SER 1780.0412
SER 1790.0506
LEU 1800.0245
SER 1810.0163
PRO 1820.0327
ASP 1830.0334
GLN 1840.0163
VAL 1850.0083
LYS 1860.0130
LYS 1870.0193
HIS 1890.0146
ASP 1900.0140
ARG 1910.0159
VAL 1920.0183
GLN 1930.0273
LYS 1940.0255
THR 1950.0183
LYS 1960.0212
ASP 1970.0273
GLN 1980.0173
VAL 1990.0107
GLN 2000.0108
LYS 2010.0140
CYS 2020.0125
ARG 2030.0100
GLU 2040.0120
LYS 2050.0148
TYR 2060.0155
GLU 2070.0182
GLN 2080.0196
ALA 2090.0188
ILE 2100.0179
ALA 2110.0215
GLU 2120.0204
ILE 2130.0134
THR 2140.0138
LYS 2150.0162
TYR 2160.0110
ASN 2170.0043
SER 2180.0034
VAL 2190.0104
TYR 2200.0106
ILE 2210.0092
GLU 2220.0125
ASP 2230.0153
THR 2250.0156
SER 2260.0163
VAL 2270.0159
PHE 2280.0147
GLU 2290.0146
LYS 2300.0133
CYS 2310.0106
GLN 2320.0112
THR 2330.0092
PHE 2340.0051
GLU 2350.0065
LYS 2360.0076
THR 2370.0052
ARG 2380.0057
LEU 2390.0074
GLN 2400.0074
PHE 2410.0073
PHE 2420.0085
LYS 2430.0084
GLU 2440.0084
ILE 2450.0086
LEU 2460.0079
PHE 2470.0072
ASN 2480.0071
VAL 2490.0057
HIS 2500.0046
SER 2510.0028
CYS 2520.0016
LEU 2530.0021
ASP 2540.0041
LEU 2550.0068
THR 2560.0083
LYS 2570.0080
VAL 2580.0086
GLN 2590.0094
SER 2600.0091
LEU 2610.0095
PRO 2620.0088
GLN 2630.0092
ILE 2640.0095
TYR 2650.0083
GLU 2660.0073
GLU 2670.0087
PHE 2680.0082
SER 2690.0062
HIS 2700.0088
THR 2710.0101
ILE 2720.0081
ASN 2730.0098
ASN 2740.0125
ALA 2750.0114
ASP 2760.0120
GLN 2770.0100
GLN 2780.0091
LYS 2790.0091
ASP 2800.0079
LEU 2810.0055
LYS 2820.0015
TRP 2830.0043
TRP 2840.0037
SER 2850.0066
ASN 2860.0096
ASN 2870.0125
HIS 2880.0122
GLY 2890.0112
ILE 2900.0131
ASN 2910.0146
ALA 2930.0201
ASN 2950.0145
TRP 2960.0103
PRO 2970.0105
SER 2980.0238

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.