CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  ENDOCYTOSIS 29-JUN-09 3I2W  ***

<R2> analysis for 2602230445411017275

---  normal mode 90  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0663
SER 140.0124
ASP 150.0117
SER 160.0111
PHE 170.0108
TRP 180.0128
GLU 190.0138
PRO 200.0124
GLY 210.0097
ASN 220.0092
TYR 230.0044
LYS 240.0009
ARG 250.0022
THR 260.0029
THR 270.0039
LYS 280.0055
ARG 290.0023
ILE 300.0027
GLU 310.0032
ASP 320.0075
GLY 330.0078
TYR 340.0067
LYS 350.0135
LEU 360.0129
CYS 370.0143
ASN 380.0160
ASP 390.0153
LEU 400.0152
GLN 410.0186
GLN 420.0152
LEU 430.0126
ILE 440.0084
GLN 450.0064
GLU 460.0074
ARG 470.0058
ALA 480.0053
ASP 490.0036
ILE 500.0069
GLU 510.0061
LYS 520.0062
GLY 530.0086
TYR 540.0062
ALA 550.0058
LYS 560.0200
SER 570.0152
LEU 580.0035
ARG 590.0070
THR 600.0077
TRP 610.0050
SER 620.0095
LYS 630.0126
LYS 640.0057
TRP 650.0129
GLY 660.0200
GLU 670.0168
LEU 680.0079
ILE 690.0142
GLU 700.0173
LYS 710.0193
GLY 720.0122
PRO 730.0123
GLU 740.0105
TYR 750.0111
GLY 760.0101
THR 770.0073
THR 780.0084
GLU 790.0083
ALA 800.0082
ALA 810.0077
TRP 820.0065
LYS 830.0099
GLY 840.0117
VAL 850.0092
LEU 860.0102
THR 870.0078
GLU 880.0045
SER 890.0072
GLU 900.0072
ARG 910.0069
ILE 920.0066
SER 930.0055
ASP 940.0080
VAL 950.0059
HIS 960.0030
LYS 980.0071
ILE 990.0071
LYS 1000.0037
ASP 1010.0058
ASN 1020.0076
LEU 1030.0048
CYS 1040.0140
ASN 1050.0196
ASP 1060.0181
VAL 1070.0156
ASN 1080.0183
SER 1090.0211
GLN 1100.0224
ILE 1110.0218
LYS 1120.0227
THR 1130.0201
TRP 1140.0197
GLN 1150.0129
LYS 1160.0082
GLU 1170.0229
ASN 1180.0159
TYR 1190.0155
HIS 1200.0245
HIS 1210.0283
THR 1220.0198
LEU 1230.0238
GLN 1250.0246
ILE 1260.0172
LYS 1270.0093
GLU 1280.0041
ARG 1290.0047
LYS 1300.0111
ASP 1310.0130
LEU 1320.0118
GLU 1330.0121
ASP 1340.0164
LEU 1350.0145
PHE 1360.0054
LYS 1370.0054
LYS 1380.0041
ALA 1390.0122
GLN 1400.0124
LYS 1410.0109
PRO 1420.0097
TRP 1430.0046
ALA 1440.0071
LYS 1450.0051
LEU 1460.0057
LEU 1470.0058
ALA 1480.0057
LYS 1490.0086
VAL 1500.0081
GLU 1510.0121
LYS 1520.0139
ALA 1530.0112
LYS 1540.0127
ALA 1550.0133
ASP 1560.0132
TYR 1570.0133
HIS 1580.0105
SER 1590.0064
ALA 1600.0082
CYS 1610.0071
LYS 1620.0073
THR 1630.0120
GLU 1640.0082
ARG 1650.0075
SER 1660.0091
ALA 1670.0072
THR 1680.0137
HIS 1890.0180
ASP 1900.0171
ARG 1910.0118
VAL 1920.0153
GLN 1930.0168
LYS 1940.0139
THR 1950.0102
LYS 1960.0105
ASP 1970.0064
GLN 1980.0026
VAL 1990.0035
GLN 2000.0078
LYS 2010.0103
CYS 2020.0113
ARG 2030.0130
GLU 2040.0114
LYS 2050.0126
TYR 2060.0119
GLU 2070.0066
GLN 2080.0068
ALA 2090.0111
ILE 2100.0110
ALA 2110.0119
GLU 2120.0134
ILE 2130.0080
THR 2140.0078
LYS 2150.0122
TYR 2160.0042
ASN 2170.0051
SER 2180.0081
VAL 2190.0130
TYR 2200.0123
ILE 2210.0111
GLU 2220.0106
ASP 2230.0091
THR 2250.0113
SER 2260.0115
VAL 2270.0092
PHE 2280.0069
GLU 2290.0128
LYS 2300.0156
CYS 2310.0081
GLN 2320.0066
THR 2330.0105
PHE 2340.0070
GLU 2350.0041
LYS 2360.0040
THR 2370.0081
ARG 2380.0089
LEU 2390.0075
GLN 2400.0095
PHE 2410.0129
PHE 2420.0135
LYS 2430.0081
GLU 2440.0083
ILE 2450.0114
LEU 2460.0054
PHE 2470.0067
ASN 2480.0078
VAL 2490.0170
HIS 2500.0170
SER 2510.0218
CYS 2520.0221
LEU 2530.0205
ASP 2540.0191
LEU 2550.0161
THR 2560.0199
LYS 2570.0277
VAL 2580.0059
GLN 2590.0121
SER 2600.0121
LEU 2610.0089
PRO 2620.0081
GLN 2630.0095
ILE 2640.0064
TYR 2650.0041
GLU 2660.0047
GLU 2670.0029
PHE 2680.0017
SER 2690.0041
HIS 2700.0079
THR 2710.0072
ILE 2720.0059
ASN 2730.0067
ASN 2740.0053
ALA 2750.0079
ASP 2760.0143
GLN 2770.0152
GLN 2780.0154
LYS 2790.0157
ASP 2800.0140
LEU 2810.0154
LYS 2820.0182
TRP 2830.0100
TRP 2840.0093
SER 2850.0097
ASN 2860.0149
ASN 2870.0156
HIS 2880.0125
GLY 2890.0049
ILE 2900.0080
ASN 2910.0300
ALA 2930.0304
ASN 2950.0244
TRP 2960.0120
PRO 2970.0189
SER 2980.0030
PHE 2990.0037
VAL 3000.0061
GLU 3010.0169
TYR 3020.0123
THR 3030.0229
SER 140.0663
ASP 150.0548
SER 160.0210
PHE 170.0074
TRP 180.0129
GLU 190.0194
PRO 200.0148
GLY 210.0137
ASN 220.0078
TYR 230.0067
LYS 240.0081
ARG 250.0110
THR 260.0127
THR 270.0109
LYS 280.0103
ARG 290.0127
ILE 300.0095
GLU 310.0091
ASP 320.0113
GLY 330.0070
TYR 340.0065
LYS 350.0070
LEU 360.0032
CYS 370.0059
ASN 380.0098
ASP 390.0118
LEU 400.0150
GLN 410.0179
GLN 420.0187
LEU 430.0196
ILE 440.0190
GLN 450.0207
GLU 460.0194
ARG 470.0138
ALA 480.0140
ASP 490.0166
ILE 500.0111
GLU 510.0078
LYS 520.0077
GLY 530.0060
TYR 540.0070
ALA 550.0051
LYS 560.0128
SER 570.0136
LEU 580.0134
ARG 590.0165
THR 600.0171
TRP 610.0169
SER 620.0246
LYS 630.0240
LYS 640.0195
TRP 650.0197
GLY 660.0253
GLU 670.0263
LEU 680.0231
ILE 690.0193
GLU 700.0255
LYS 710.0270
GLY 720.0224
PRO 730.0205
GLU 740.0087
TYR 750.0096
GLY 760.0094
THR 770.0086
THR 780.0089
GLU 790.0083
ALA 800.0043
ALA 810.0080
TRP 820.0063
LYS 830.0130
GLY 840.0109
VAL 850.0156
LEU 860.0204
THR 870.0168
GLU 880.0154
SER 890.0195
GLU 900.0194
ARG 910.0145
ILE 920.0102
SER 930.0120
ASP 940.0104
VAL 950.0104
HIS 960.0087
LYS 980.0307
ILE 990.0200
LYS 1000.0228
ASP 1010.0322
ASN 1020.0195
LEU 1030.0168
CYS 1040.0254
ASN 1050.0251
ASP 1060.0160
VAL 1070.0194
ASN 1080.0197
SER 1090.0145
GLN 1100.0128
ILE 1110.0103
LYS 1120.0024
THR 1130.0130
TRP 1140.0129
GLN 1150.0075
LYS 1160.0180
GLU 1170.0250
ASN 1180.0169
TYR 1190.0106
HIS 1200.0170
HIS 1210.0217
THR 1220.0216
LEU 1230.0253
GLN 1250.0142
ILE 1260.0133
LYS 1270.0116
GLU 1280.0090
ARG 1290.0086
LYS 1300.0085
ASP 1310.0111
LEU 1320.0110
GLU 1330.0097
ASP 1340.0087
LEU 1350.0084
PHE 1360.0077
LYS 1370.0082
LYS 1380.0056
ALA 1390.0046
GLN 1400.0044
LYS 1410.0055
PRO 1420.0102
TRP 1430.0068
ALA 1440.0075
LYS 1450.0125
LEU 1460.0108
LEU 1470.0100
ALA 1480.0097
LYS 1490.0063
VAL 1500.0081
GLU 1510.0112
LYS 1520.0114
ALA 1530.0092
LYS 1540.0096
ALA 1550.0114
ASP 1560.0113
TYR 1570.0086
HIS 1580.0060
SER 1590.0039
ALA 1600.0019
CYS 1610.0059
LYS 1620.0111
THR 1630.0111
GLU 1640.0097
ARG 1650.0134
SER 1660.0083
ALA 1670.0050
THR 1680.0035
ASN 1690.0066
GLN 1700.0115
GLU 1710.0131
ARG 1720.0165
ASN 1730.0127
ALA 1740.0132
ASN 1750.0139
ALA 1760.0078
ASP 1770.0141
SER 1780.0321
SER 1790.0160
LEU 1800.0140
SER 1810.0127
PRO 1820.0041
ASP 1830.0110
GLN 1840.0115
VAL 1850.0074
LYS 1860.0075
LYS 1870.0145
HIS 1890.0129
ASP 1900.0123
ARG 1910.0053
VAL 1920.0060
GLN 1930.0123
LYS 1940.0133
THR 1950.0104
LYS 1960.0101
ASP 1970.0097
GLN 1980.0055
VAL 1990.0055
GLN 2000.0039
LYS 2010.0068
CYS 2020.0073
ARG 2030.0088
GLU 2040.0082
LYS 2050.0069
TYR 2060.0067
GLU 2070.0054
GLN 2080.0027
ALA 2090.0065
ILE 2100.0125
ALA 2110.0145
GLU 2120.0117
ILE 2130.0154
THR 2140.0194
LYS 2150.0243
TYR 2160.0164
ASN 2170.0099
SER 2180.0154
VAL 2190.0179
TYR 2200.0127
ILE 2210.0146
GLU 2220.0195
ASP 2230.0104
THR 2250.0080
SER 2260.0041
VAL 2270.0059
PHE 2280.0040
GLU 2290.0086
LYS 2300.0061
CYS 2310.0122
GLN 2320.0139
THR 2330.0163
PHE 2340.0145
GLU 2350.0133
LYS 2360.0111
THR 2370.0102
ARG 2380.0087
LEU 2390.0076
GLN 2400.0103
PHE 2410.0087
PHE 2420.0085
LYS 2430.0114
GLU 2440.0168
ILE 2450.0190
LEU 2460.0142
PHE 2470.0150
ASN 2480.0181
VAL 2490.0155
HIS 2500.0099
SER 2510.0092
CYS 2520.0110
LEU 2530.0120
ASP 2540.0078
LEU 2550.0084
THR 2560.0063
LYS 2570.0053
VAL 2580.0113
GLN 2590.0131
SER 2600.0109
LEU 2610.0057
PRO 2620.0099
GLN 2630.0092
ILE 2640.0038
TYR 2650.0120
GLU 2660.0140
GLU 2670.0070
PHE 2680.0094
SER 2690.0136
HIS 2700.0110
THR 2710.0068
ILE 2720.0102
ASN 2730.0124
ASN 2740.0110
ALA 2750.0114
ASP 2760.0168
GLN 2770.0074
GLN 2780.0132
LYS 2790.0165
ASP 2800.0113
LEU 2810.0058
LYS 2820.0051
TRP 2830.0015
TRP 2840.0019
SER 2850.0086
ASN 2860.0179
ASN 2870.0192
HIS 2880.0082
GLY 2890.0094
ILE 2900.0127
ASN 2910.0373
ALA 2930.0298
ASN 2950.0040
TRP 2960.0045
PRO 2970.0102
SER 2980.0306

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.