CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  ENDOCYTOSIS 29-JUN-09 3I2W  ***

Normal Mode Analysis for ID 2602230445411017275

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.3553
mode 8 1.29 0.5064
mode 9 1.74 0.3817
mode 10 2.25 0.4883
mode 11 3.02 0.5476
mode 12 3.17 0.6030
mode 13 3.72 0.3257
mode 14 4.52 0.4622
mode 15 4.86 0.4484
mode 16 5.19 0.5357
mode 17 5.84 0.5000
mode 18 6.50 0.6216
mode 19 6.76 0.7729
mode 20 7.26 0.6018
mode 21 8.41 0.6498
mode 22 9.02 0.5265
mode 23 9.32 0.6382
mode 24 10.08 0.5631
mode 25 10.57 0.6562
mode 26 10.93 0.5785
mode 27 11.62 0.4477
mode 28 12.60 0.6571
mode 29 12.83 0.6304
mode 30 13.63 0.5988
mode 31 14.09 0.6329
mode 32 14.76 0.5665
mode 33 15.17 0.4048
mode 34 15.66 0.5557
mode 35 16.97 0.5063
mode 36 17.36 0.5070
mode 37 17.46 0.5300
mode 38 17.96 0.6225
mode 39 18.72 0.3608
mode 40 18.90 0.6219
mode 41 19.45 0.3912
mode 42 20.38 0.5079
mode 43 20.61 0.6082
mode 44 21.10 0.3910
mode 45 21.48 0.4391
mode 46 22.32 0.4887
mode 47 22.52 0.3025
mode 48 22.69 0.5400
mode 49 23.21 0.4834
mode 50 23.42 0.3773
mode 51 23.84 0.5972
mode 52 24.28 0.5779
mode 53 24.56 0.4781
mode 54 24.99 0.4408
mode 55 25.50 0.4024
mode 56 25.53 0.2122
mode 57 26.12 0.2808
mode 58 26.27 0.3466
mode 59 26.81 0.2933
mode 60 27.07 0.4117
mode 61 27.30 0.3674
mode 62 27.42 0.3570
mode 63 27.78 0.4589
mode 64 27.95 0.3032
mode 65 28.09 0.3674
mode 66 28.82 0.3518
mode 67 29.12 0.5190
mode 68 29.43 0.2960
mode 69 29.45 0.1310
mode 70 29.59 0.4136
mode 71 29.88 0.5225
mode 72 30.06 0.4078
mode 73 30.14 0.3787
mode 74 30.34 0.5251
mode 75 30.62 0.4809
mode 76 30.90 0.5528
mode 77 31.08 0.3716
mode 78 31.24 0.3764
mode 79 31.59 0.3906
mode 80 31.70 0.5292
mode 81 31.81 0.4850
mode 82 32.01 0.5465
mode 83 32.11 0.4262
mode 84 32.21 0.4760
mode 85 32.41 0.3898
mode 86 32.56 0.2745
mode 87 32.78 0.4371
mode 88 33.07 0.5032
mode 89 33.22 0.5317
mode 90 33.66 0.4884
mode 91 33.69 0.4190
mode 92 33.94 0.5039
mode 93 34.11 0.5290
mode 94 34.26 0.4397
mode 95 34.37 0.5273
mode 96 34.51 0.4584
mode 97 34.67 0.2759
mode 98 34.83 0.5838
mode 99 35.00 0.4723
mode 100 35.09 0.2466
mode 101 35.18 0.4934
mode 102 35.53 0.3171
mode 103 35.61 0.4049
mode 104 35.78 0.3258
mode 105 35.84 0.3023
mode 106 36.01 0.1063

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.