Should you encounter any unexpected behaviour,
please let us know.
elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.

STDOUT:

CUTOFF set to default value (CUTOFF=8)
Build Tirion matrix:
 Pdbmat> Computes the Hessian matrix, using an Elastic Network Model.
 Pdbmat> Version 3.50, Fevrier 2004.    

 Pdbmat> Options to be read in pdbmat.dat file.

 Pdbmat> Coordinate filename     = 2602240914591290018.atom

 Pdbmat> Distance cutoff         =       8.00
         Force constant          =      10.00
         Origin of mass values   =       CONS
 Pdbmat> Levelshift              =    1.0E-09
         PRINTing level          =          2

 Pdbmat> Coordinate file 2602240914591290018.atom to be opened.

 Openam> File opened: 2602240914591290018.atom

 Pdbmat> Coordinate file in PDB format.

 Rdatompdb> Reading pdb file.
 Rdatompdb> End of file reached.
 Rdatompdb> Number of I/O errors:      0

 Rdatompdb> Number of residues found =   1750
            First residue number     =      1
            Last  residue number     =   1750
            Number of atoms found    =  62664
            Mean number per residue  =     35.8

 Pdbmat> Coordinate statistics: 
 =    64.696272 +/-    34.763849 From:     1.430000 To:   127.519000
 =    66.495992 +/-    34.374229 From:     1.107000 To:   130.438000
 =    89.013763 +/-    14.528594 From:     4.112000 To:   178.913000
 Pdbmat> Masses are all set to one.
%Pdbmat-W> residue:'HIE ' is not a well known amino-acid.
%Pdbmat-W> residue:'HIE ' is not a well known amino-acid.
%Pdbmat-W> residue:'HIE ' is not a well known amino-acid.
%Pdbmat-W> residue:'HIE ' is not a well known amino-acid.
%Pdbmat-W> residue:'HIE ' is not a well known amino-acid.
%Pdbmat-W> residue:'HIE ' is not a well known amino-acid.
%Pdbmat-W> residue:'PA  ' is not a well known amino-acid.
%Pdbmat-W> residue:'PC  ' is not a well known amino-acid.
%Pdbmat-W> residue:'OL  ' is not a well known amino-acid.
%Pdbmat-W> ........

%Pdbmat-W>   1559 residue(s) not known.

 Openam> File opened: pdbmat.xyzm
 Pdbmat> Coordinates and masses considered are saved.

 Openam> File opened: pdbmat.sdijb

 Pdbmat> Matrix statistics:

 Pdbmat> The matrix is  10.6447 % Filled.
 Pdbmat>     52235845  non-zero elements.
 Pdbmat>      5763195 atom-atom interactions.

 Pdbmat> Number per atom=    183.94 +/-     50.45
         Maximum number =    319
         Minimum number =      0

 Pdbmat> Matrix trace   = 1.152639E+08
 Pdbmat> Larger element =  1154.93    
 Pdbmat>      0 elements larger than +/-  1.0E+10

 Pdbmat> Normal end.
automatic determination of NRBL (NRBL = nresidues/200 + 1)
1750 non-zero elements, NRBL set to 9
Diagonalize Tirion matrix using diagrtb
 Diagrtb> Diagonalizes a matrix, using the RTB/BNM approximation.
 Diagrtb> Version 2.52, November 2004. 
 Diagrtb> Options to be read in diagrtb.dat file.

 Diagrtb> Options taken into account:

 MATRix filename          = pdbmat.sdijb
 COORdinates filename     = 2602240914591290018.atom
 Eigenvector OUTPut file  = matrix.eigenrtb
 Nb of VECTors required   =        106
 EigeNVALues chosen       =       LOWE
 Type of SUBStructuring   =       NONE
 Nb of residues per BLOck =          9
 Origin of MASS values    =       CONS
 MATRix FORMat            =       BINA
 Temporary files cleaning =       ALL 
 Output PRINting level    =          2

 Diagrtb> Memory allocation for Blocpdb.

 Blocpdb> Entering in.

 Openam> file on opening on unit     10:
 diagrtb_work.xyzm   

 Blocpdb> Coordinate file 2602240914591290018.atom to be opened.

 Openam> file on opening on unit     11:
 2602240914591290018.atom                                                                                                        

 Blocpdb> Coordinate file in PDB format.

 Blocpdb> 62664 atoms picked in pdb file.
 Blocpdb>   All masses set to unity.
 Blocpdb> Coordinate file is rewritten.

 Blocpdb> Substructuring:
 Blocpdb>     9 residue(s) per block.
 Blocpdb>  1750 residues.
 Blocpdb>   113 atoms in block      1
 Block first atom:      1
 Blocpdb>   131 atoms in block      2
 Block first atom:    114
 Blocpdb>   164 atoms in block      3
 Block first atom:    245
 Blocpdb>   147 atoms in block      4
 Block first atom:    409
 Blocpdb>   108 atoms in block      5
 Block first atom:    556
 Blocpdb>   141 atoms in block      6
 Block first atom:    664
 Blocpdb>   130 atoms in block      7
 Block first atom:    805
 Blocpdb>   131 atoms in block      8
 Block first atom:    935
 Blocpdb>   158 atoms in block      9
 Block first atom:   1066
 Blocpdb>   144 atoms in block     10
 Block first atom:   1224
 Blocpdb>   152 atoms in block     11
 Block first atom:   1368
 Blocpdb>   126 atoms in block     12
 Block first atom:   1520
 Blocpdb>   149 atoms in block     13
 Block first atom:   1646
 Blocpdb>   146 atoms in block     14
 Block first atom:   1795
 Blocpdb>   135 atoms in block     15
 Block first atom:   1941
 Blocpdb>   153 atoms in block     16
 Block first atom:   2076
 Blocpdb>   148 atoms in block     17
 Block first atom:   2229
 Blocpdb>   142 atoms in block     18
 Block first atom:   2377
 Blocpdb>   133 atoms in block     19
 Block first atom:   2519
 Blocpdb>   140 atoms in block     20
 Block first atom:   2652
 Blocpdb>   140 atoms in block     21
 Block first atom:   2792
 Blocpdb>   200 atoms in block     22
 Block first atom:   2932
 Blocpdb>   402 atoms in block     23
 Block first atom:   3132
 Blocpdb>   402 atoms in block     24
 Block first atom:   3534
 Blocpdb>   402 atoms in block     25
 Block first atom:   3936
 Blocpdb>   402 atoms in block     26
 Block first atom:   4338
 Blocpdb>   402 atoms in block     27
 Block first atom:   4740
 Blocpdb>   402 atoms in block     28
 Block first atom:   5142
 Blocpdb>   402 atoms in block     29
 Block first atom:   5544
 Blocpdb>   402 atoms in block     30
 Block first atom:   5946
 Blocpdb>   402 atoms in block     31
 Block first atom:   6348
 Blocpdb>   402 atoms in block     32
 Block first atom:   6750
 Blocpdb>   402 atoms in block     33
 Block first atom:   7152
 Blocpdb>   402 atoms in block     34
 Block first atom:   7554
 Blocpdb>   402 atoms in block     35
 Block first atom:   7956
 Blocpdb>   402 atoms in block     36
 Block first atom:   8358
 Blocpdb>   402 atoms in block     37
 Block first atom:   8760
 Blocpdb>   402 atoms in block     38
 Block first atom:   9162
 Blocpdb>   402 atoms in block     39
 Block first atom:   9564
 Blocpdb>   402 atoms in block     40
 Block first atom:   9966
 Blocpdb>   402 atoms in block     41
 Block first atom:  10368
 Blocpdb>   402 atoms in block     42
 Block first atom:  10770
 Blocpdb>   402 atoms in block     43
 Block first atom:  11172
 Blocpdb>   402 atoms in block     44
 Block first atom:  11574
 Blocpdb>   402 atoms in block     45
 Block first atom:  11976
 Blocpdb>   402 atoms in block     46
 Block first atom:  12378
 Blocpdb>   402 atoms in block     47
 Block first atom:  12780
 Blocpdb>   402 atoms in block     48
 Block first atom:  13182
 Blocpdb>   402 atoms in block     49
 Block first atom:  13584
 Blocpdb>   402 atoms in block     50
 Block first atom:  13986
 Blocpdb>   402 atoms in block     51
 Block first atom:  14388
 Blocpdb>   402 atoms in block     52
 Block first atom:  14790
 Blocpdb>   402 atoms in block     53
 Block first atom:  15192
 Blocpdb>   402 atoms in block     54
 Block first atom:  15594
 Blocpdb>   402 atoms in block     55
 Block first atom:  15996
 Blocpdb>   402 atoms in block     56
 Block first atom:  16398
 Blocpdb>   375 atoms in block     57
 Block first atom:  16800
 Blocpdb>   375 atoms in block     58
 Block first atom:  17175
 Blocpdb>   375 atoms in block     59
 Block first atom:  17550
 Blocpdb>   375 atoms in block     60
 Block first atom:  17925
 Blocpdb>   375 atoms in block     61
 Block first atom:  18300
 Blocpdb>   375 atoms in block     62
 Block first atom:  18675
 Blocpdb>   375 atoms in block     63
 Block first atom:  19050
 Blocpdb>   375 atoms in block     64
 Block first atom:  19425
 Blocpdb>   375 atoms in block     65
 Block first atom:  19800
 Blocpdb>   375 atoms in block     66
 Block first atom:  20175
 Blocpdb>   375 atoms in block     67
 Block first atom:  20550
 Blocpdb>   375 atoms in block     68
 Block first atom:  20925
 Blocpdb>   375 atoms in block     69
 Block first atom:  21300
 Blocpdb>   375 atoms in block     70
 Block first atom:  21675
 Blocpdb>   375 atoms in block     71
 Block first atom:  22050
 Blocpdb>   375 atoms in block     72
 Block first atom:  22425
 Blocpdb>   375 atoms in block     73
 Block first atom:  22800
 Blocpdb>   375 atoms in block     74
 Block first atom:  23175
 Blocpdb>   375 atoms in block     75
 Block first atom:  23550
 Blocpdb>   375 atoms in block     76
 Block first atom:  23925
 Blocpdb>   375 atoms in block     77
 Block first atom:  24300
 Blocpdb>   375 atoms in block     78
 Block first atom:  24675
 Blocpdb>   377 atoms in block     79
 Block first atom:  25050
 Blocpdb>   381 atoms in block     80
 Block first atom:  25427
 Blocpdb>   381 atoms in block     81
 Block first atom:  25808
 Blocpdb>   381 atoms in block     82
 Block first atom:  26189
 Blocpdb>   381 atoms in block     83
 Block first atom:  26570
 Blocpdb>   381 atoms in block     84
 Block first atom:  26951
 Blocpdb>   381 atoms in block     85
 Block first atom:  27332
 Blocpdb>   381 atoms in block     86
 Block first atom:  27713
 Blocpdb>   381 atoms in block     87
 Block first atom:  28094
 Blocpdb>   427 atoms in block     88
 Block first atom:  28475
 Blocpdb>   448 atoms in block     89
 Block first atom:  28902
 Blocpdb>   446 atoms in block     90
 Block first atom:  29350
 Blocpdb>   446 atoms in block     91
 Block first atom:  29796
 Blocpdb>   446 atoms in block     92
 Block first atom:  30242
 Blocpdb>   446 atoms in block     93
 Block first atom:  30688
 Blocpdb>   448 atoms in block     94
 Block first atom:  31134
 Blocpdb>   446 atoms in block     95
 Block first atom:  31582
 Blocpdb>   446 atoms in block     96
 Block first atom:  32028
 Blocpdb>   432 atoms in block     97
 Block first atom:  32474
 Blocpdb>   402 atoms in block     98
 Block first atom:  32906
 Blocpdb>   402 atoms in block     99
 Block first atom:  33308
 Blocpdb>   402 atoms in block    100
 Block first atom:  33710
 Blocpdb>   402 atoms in block    101
 Block first atom:  34112
 Blocpdb>   402 atoms in block    102
 Block first atom:  34514
 Blocpdb>   402 atoms in block    103
 Block first atom:  34916
 Blocpdb>   402 atoms in block    104
 Block first atom:  35318
 Blocpdb>   402 atoms in block    105
 Block first atom:  35720
 Blocpdb>   402 atoms in block    106
 Block first atom:  36122
 Blocpdb>   402 atoms in block    107
 Block first atom:  36524
 Blocpdb>   402 atoms in block    108
 Block first atom:  36926
 Blocpdb>   402 atoms in block    109
 Block first atom:  37328
 Blocpdb>   402 atoms in block    110
 Block first atom:  37730
 Blocpdb>   402 atoms in block    111
 Block first atom:  38132
 Blocpdb>   402 atoms in block    112
 Block first atom:  38534
 Blocpdb>   402 atoms in block    113
 Block first atom:  38936
 Blocpdb>   402 atoms in block    114
 Block first atom:  39338
 Blocpdb>   402 atoms in block    115
 Block first atom:  39740
 Blocpdb>   402 atoms in block    116
 Block first atom:  40142
 Blocpdb>   402 atoms in block    117
 Block first atom:  40544
 Blocpdb>   402 atoms in block    118
 Block first atom:  40946
 Blocpdb>   402 atoms in block    119
 Block first atom:  41348
 Blocpdb>   402 atoms in block    120
 Block first atom:  41750
 Blocpdb>   402 atoms in block    121
 Block first atom:  42152
 Blocpdb>   402 atoms in block    122
 Block first atom:  42554
 Blocpdb>   402 atoms in block    123
 Block first atom:  42956
 Blocpdb>   402 atoms in block    124
 Block first atom:  43358
 Blocpdb>   402 atoms in block    125
 Block first atom:  43760
 Blocpdb>   402 atoms in block    126
 Block first atom:  44162
 Blocpdb>   402 atoms in block    127
 Block first atom:  44564
 Blocpdb>   402 atoms in block    128
 Block first atom:  44966
 Blocpdb>   402 atoms in block    129
 Block first atom:  45368
 Blocpdb>   402 atoms in block    130
 Block first atom:  45770
 Blocpdb>   393 atoms in block    131
 Block first atom:  46172
 Blocpdb>   375 atoms in block    132
 Block first atom:  46565
 Blocpdb>   375 atoms in block    133
 Block first atom:  46940
 Blocpdb>   375 atoms in block    134
 Block first atom:  47315
 Blocpdb>   375 atoms in block    135
 Block first atom:  47690
 Blocpdb>   375 atoms in block    136
 Block first atom:  48065
 Blocpdb>   375 atoms in block    137
 Block first atom:  48440
 Blocpdb>   375 atoms in block    138
 Block first atom:  48815
 Blocpdb>   375 atoms in block    139
 Block first atom:  49190
 Blocpdb>   375 atoms in block    140
 Block first atom:  49565
 Blocpdb>   375 atoms in block    141
 Block first atom:  49940
 Blocpdb>   375 atoms in block    142
 Block first atom:  50315
 Blocpdb>   375 atoms in block    143
 Block first atom:  50690
 Blocpdb>   375 atoms in block    144
 Block first atom:  51065
 Blocpdb>   375 atoms in block    145
 Block first atom:  51440
 Blocpdb>   375 atoms in block    146
 Block first atom:  51815
 Blocpdb>   375 atoms in block    147
 Block first atom:  52190
 Blocpdb>   375 atoms in block    148
 Block first atom:  52565
 Blocpdb>   375 atoms in block    149
 Block first atom:  52940
 Blocpdb>   375 atoms in block    150
 Block first atom:  53315
 Blocpdb>   375 atoms in block    151
 Block first atom:  53690
 Blocpdb>   375 atoms in block    152
 Block first atom:  54065
 Blocpdb>   375 atoms in block    153
 Block first atom:  54440
 Blocpdb>   379 atoms in block    154
 Block first atom:  54815
 Blocpdb>   381 atoms in block    155
 Block first atom:  55194
 Blocpdb>   381 atoms in block    156
 Block first atom:  55575
 Blocpdb>   381 atoms in block    157
 Block first atom:  55956
 Blocpdb>   381 atoms in block    158
 Block first atom:  56337
 Blocpdb>   381 atoms in block    159
 Block first atom:  56718
 Blocpdb>   381 atoms in block    160
 Block first atom:  57099
 Blocpdb>   381 atoms in block    161
 Block first atom:  57480
 Blocpdb>   381 atoms in block    162
 Block first atom:  57861
 Blocpdb>   446 atoms in block    163
 Block first atom:  58242
 Blocpdb>   446 atoms in block    164
 Block first atom:  58688
 Blocpdb>   446 atoms in block    165
 Block first atom:  59134
 Blocpdb>   448 atoms in block    166
 Block first atom:  59580
 Blocpdb>   446 atoms in block    167
 Block first atom:  60028
 Blocpdb>   446 atoms in block    168
 Block first atom:  60474
 Blocpdb>   446 atoms in block    169
 Block first atom:  60920
 Blocpdb>   446 atoms in block    170
 Block first atom:  61366
 Blocpdb>   448 atoms in block    171
 Block first atom:  61812
 Blocpdb>   203 atoms in block    172
 Block first atom:  62260
 Blocpdb>     9 atoms in block    173
 Block first atom:  62463
 Blocpdb>     9 atoms in block    174
 Block first atom:  62472
 Blocpdb>     9 atoms in block    175
 Block first atom:  62481
 Blocpdb>     9 atoms in block    176
 Block first atom:  62490
 Blocpdb>     9 atoms in block    177
 Block first atom:  62499
 Blocpdb>     9 atoms in block    178
 Block first atom:  62508
 Blocpdb>     9 atoms in block    179
 Block first atom:  62517
 Blocpdb>     9 atoms in block    180
 Block first atom:  62526
 Blocpdb>     9 atoms in block    181
 Block first atom:  62535
 Blocpdb>     9 atoms in block    182
 Block first atom:  62544
 Blocpdb>     9 atoms in block    183
 Block first atom:  62553
 Blocpdb>     9 atoms in block    184
 Block first atom:  62562
 Blocpdb>     9 atoms in block    185
 Block first atom:  62571
 Blocpdb>     9 atoms in block    186
 Block first atom:  62580
 Blocpdb>     9 atoms in block    187
 Block first atom:  62589
 Blocpdb>     9 atoms in block    188
 Block first atom:  62598
 Blocpdb>     9 atoms in block    189
 Block first atom:  62607
 Blocpdb>     9 atoms in block    190
 Block first atom:  62616
 Blocpdb>     9 atoms in block    191
 Block first atom:  62625
 Blocpdb>     9 atoms in block    192
 Block first atom:  62634
 Blocpdb>     9 atoms in block    193
 Block first atom:  62643
 Blocpdb>     9 atoms in block    194
 Block first atom:  62652
 Blocpdb>     4 atoms in block    195
 Block first atom:  62660

 Blocpdb>   195 blocks.

 Blocpdb> At most,    448 atoms in each of them.
 Blocpdb> At least,     4 atoms in each of them.

 Blocpdb> Normal end of Blocpdb.

 Diagrtb> Memory allocation for Prepmat.
 Diagrtb> Memory allocation for RTB.
 Diagrtb> Memory allocation for Diagstd.
 Diagrtb> Memory allocation for RTB_to_modes.

%Diagrtb-Er> IRWKMX up to:    254467585 Maximum allowed is LRWORK=     32000000

%Diagrtb-Er> Not enough memory allowed for working arrays. Sorry.
 Lower the number of blocks, the sizes of the largest ones...
 Or recompile DIAGRTB with larger WORKing arrays.



STDERR:
STOP *Working arrays allocation error*

real	0m0.247s
user	0m0.236s
sys	0m0.010s

• K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
• K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.