CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  TRANSPORT PROTEIN 17-DEC-20 7L2L  ***

<R2> analysis for 2602251019571912004

---  normal mode 11  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0404
VAL 2830.0136
GLY 2840.0146
ASN 2850.0128
THR 2860.0143
VAL 2870.0148
LEU 2880.0128
HIS 2890.0100
ALA 2900.0112
LEU 2910.0125
VAL 2920.0094
GLU 2930.0086
VAL 2940.0114
ALA 2950.0116
ASP 2960.0120
ASN 2970.0133
THR 2980.0172
VAL 2990.0198
ASP 3000.0209
ASN 3010.0173
THR 3020.0164
LYS 3030.0195
PHE 3040.0194
VAL 3050.0160
THR 3060.0168
SER 3070.0200
MET 3080.0187
TYR 3090.0163
ASN 3100.0191
GLU 3110.0215
ILE 3120.0196
LEU 3130.0183
ILE 3140.0218
LEU 3150.0236
GLY 3160.0212
ALA 3170.0212
LYS 3180.0252
LEU 3190.0261
HIS 3200.0238
PRO 3210.0221
THR 3220.0218
LEU 3230.0196
LYS 3240.0157
LEU 3250.0147
GLU 3260.0110
GLU 3270.0112
ILE 3280.0126
THR 3290.0109
ASN 3300.0104
ARG 3310.0118
LYS 3320.0098
GLY 3330.0099
LEU 3340.0070
THR 3350.0073
PRO 3360.0077
LEU 3370.0059
ALA 3380.0044
LEU 3390.0049
ALA 3400.0062
ALA 3410.0054
SER 3420.0047
SER 3430.0053
GLY 3440.0072
LYS 3450.0081
ILE 3460.0094
GLY 3470.0111
VAL 3480.0097
LEU 3490.0081
ALA 3500.0107
TYR 3510.0119
ILE 3520.0094
LEU 3530.0080
GLN 3540.0106
ARG 3550.0125
GLU 3560.0139
ILE 3570.0157
HIS 3580.0180
GLU 3590.0214
PRO 3600.0230
GLU 3610.0220
CYS 3620.0191
ARG 3630.0160
HIS 3640.0140
LEU 3650.0134
SER 3660.0117
ARG 3670.0088
LYS 3680.0095
PHE 3690.0110
THR 3700.0127
GLU 3710.0121
TRP 3720.0147
ALA 3730.0177
TYR 3740.0198
GLY 3750.0225
PRO 3760.0219
VAL 3770.0185
HIS 3780.0156
SER 3790.0128
SER 3800.0111
LEU 3810.0083
TYR 3820.0070
ASP 3830.0058
LEU 3840.0051
SER 3850.0053
CYS 3860.0051
ILE 3870.0051
ASP 3880.0062
THR 3890.0062
CYS 3900.0062
GLU 3910.0083
LYS 3920.0084
ASN 3930.0068
SER 3940.0053
VAL 3950.0055
LEU 3960.0069
GLU 3970.0071
VAL 3980.0061
ILE 3990.0071
ALA 4000.0085
TYR 4010.0083
SER 4020.0078
SER 4030.0077
SER 4040.0090
GLU 4050.0087
THR 4060.0079
PRO 4070.0096
ASN 4080.0096
ARG 4090.0082
HIS 4100.0089
ASP 4110.0088
MET 4120.0081
LEU 4130.0084
LEU 4140.0094
VAL 4150.0094
GLU 4160.0102
PRO 4170.0080
LEU 4180.0076
ASN 4190.0097
ARG 4200.0097
LEU 4210.0081
LEU 4220.0090
GLN 4230.0101
ASP 4240.0094
LYS 4250.0094
TRP 4260.0099
ASP 4270.0106
ARG 4280.0105
PHE 4290.0107
VAL 4300.0101
LYS 4310.0102
ARG 4320.0108
ILE 4330.0103
PHE 4340.0098
TYR 4350.0092
PHE 4360.0087
ASN 4370.0089
PHE 4380.0079
PHE 4390.0057
VAL 4400.0066
TYR 4410.0071
CYS 4420.0045
LEU 4430.0044
TYR 4440.0060
MET 4450.0057
ILE 4460.0045
ILE 4470.0060
PHE 4480.0073
THR 4490.0066
ALA 4500.0069
ALA 4510.0094
ALA 4520.0102
TYR 4530.0094
TYR 4540.0115
ARG 4550.0136
PRO 4560.0164
VAL 4570.0180
GLU 4580.0210
GLY 4590.0228
LEU 4600.0238
PRO 4610.0215
PRO 4620.0209
TYR 4630.0213
LYS 4640.0227
LEU 4650.0208
LYS 4660.0221
ASN 4670.0228
THR 4680.0210
VAL 4690.0183
GLY 4700.0159
ASP 4710.0167
TYR 4720.0161
PHE 4730.0126
ARG 4740.0125
VAL 4750.0139
THR 4760.0112
GLY 4770.0088
GLU 4780.0112
ILE 4790.0110
LEU 4800.0078
SER 4810.0086
VAL 4820.0106
SER 4830.0089
GLY 4840.0079
GLY 4850.0098
VAL 4860.0103
TYR 4870.0091
PHE 4880.0096
PHE 4890.0110
PHE 4900.0108
ARG 4910.0101
GLY 4920.0111
ILE 4930.0115
GLN 4940.0116
TYR 4950.0112
PHE 4960.0123
LEU 4970.0129
GLN 4980.0125
ARG 4990.0125
ARG 5000.0142
PRO 5010.0143
SER 5020.0144
LEU 5030.0127
LYS 5040.0126
SER 5050.0122
LEU 5060.0115
PHE 5070.0099
VAL 5080.0110
ASP 5090.0109
SER 5100.0104
TYR 5110.0098
SER 5120.0097
GLU 5130.0108
ILE 5140.0112
LEU 5150.0102
PHE 5160.0101
PHE 5170.0114
VAL 5180.0123
GLN 5190.0109
SER 5200.0111
LEU 5210.0135
PHE 5220.0136
MET 5230.0124
LEU 5240.0139
VAL 5250.0165
SER 5260.0156
VAL 5270.0156
VAL 5280.0188
LEU 5290.0202
TYR 5300.0187
PHE 5310.0206
SER 5320.0232
GLN 5330.0238
ARG 5340.0229
LYS 5350.0207
GLU 5360.0201
TYR 5370.0177
VAL 5380.0153
ALA 5390.0164
SER 5400.0156
MET 5410.0128
VAL 5420.0117
PHE 5430.0128
SER 5440.0110
LEU 5450.0091
ALA 5460.0096
MET 5470.0100
GLY 5480.0085
TRP 5490.0071
THR 5500.0083
ASN 5510.0089
MET 5520.0077
LEU 5530.0087
TYR 5540.0091
TYR 5550.0088
THR 5560.0095
ARG 5570.0094
GLY 5580.0098
PHE 5590.0096
GLN 5600.0093
GLN 5610.0100
MET 5620.0102
GLY 5630.0095
ILE 5640.0088
TYR 5650.0093
ALA 5660.0096
VAL 5670.0085
MET 5680.0081
ILE 5690.0094
GLU 5700.0084
LYS 5710.0075
MET 5720.0113
ILE 5730.0124
LEU 5740.0098
ARG 5750.0140
ASP 5760.0185
LEU 5770.0230
CYS 5780.0254
ARG 5790.0279
PHE 5800.0301
MET 5810.0311
PHE 5820.0319
VAL 5830.0307
TYR 5840.0302
LEU 5850.0308
VAL 5860.0286
PHE 5870.0253
LEU 5880.0264
PHE 5890.0263
GLY 5900.0219
PHE 5910.0188
SER 5920.0213
THR 5930.0184
ALA 5940.0148
VAL 5950.0169
VAL 5960.0183
THR 5970.0142
LEU 5980.0158
ILE 5990.0202
GLU 6000.0219
ASP 6010.0274
SER 6260.0349
TYR 6270.0302
ASN 6280.0251
SER 6290.0266
LEU 6300.0257
TYR 6310.0325
SER 6320.0328
THR 6330.0274
CYS 6340.0299
LEU 6350.0350
GLU 6360.0321
LEU 6370.0280
PHE 6380.0329
LYS 6390.0358
PHE 6400.0316
THR 6410.0337
ILE 6420.0402
GLY 6430.0385
MET 6440.0404
GLY 6450.0343
ASP 6460.0351
LEU 6470.0296
GLU 6480.0319
PHE 6490.0339
THR 6500.0325
GLU 6510.0342
ASN 6520.0311
TYR 6530.0259
ASP 6540.0259
PHE 6550.0251
LYS 6560.0267
ALA 6570.0241
VAL 6580.0186
PHE 6590.0191
ILE 6600.0211
ILE 6610.0164
LEU 6620.0147
LEU 6630.0190
LEU 6640.0182
ALA 6650.0151
TYR 6660.0187
VAL 6670.0219
ILE 6680.0196
LEU 6690.0206
THR 6700.0252
TYR 6710.0267
ILE 6720.0251
LEU 6730.0242
LEU 6740.0273
LEU 6750.0296
ASN 6760.0290
MET 6770.0283
LEU 6780.0276
ILE 6790.0275
ALA 6800.0284
LEU 6810.0264
MET 6820.0232
GLY 6830.0233
GLU 6840.0240
THR 6850.0197
VAL 6860.0136
ASN 6870.0146
LYS 6880.0152
ILE 6890.0083
ALA 6900.0052
GLN 6910.0066
GLU 6920.0063
SER 6930.0062
LYS 6940.0077
ASN 6950.0085
ILE 6960.0082
TRP 6970.0091
LYS 6980.0095
LEU 6990.0089
GLN 7000.0095
ARG 7010.0100
ALA 7020.0092
ILE 7030.0092
THR 7040.0098
ILE 7050.0094
LEU 7060.0087
ASP 7070.0092
THR 7080.0095
GLU 7090.0092
LYS 7100.0092
SER 7110.0099
PHE 7120.0103
LEU 7130.0111
LYS 7140.0124
CYS 7150.0127
MET 7160.0123
ARG 7170.0106
LYS 7180.0108
ALA 7190.0099
PHE 7200.0085
ARG 7210.0083
SER 7220.0076
GLY 7230.0062
LYS 7240.0063
LEU 7250.0053
LEU 7260.0056
TYR 7380.0057
ARG 7390.0057
TRP 7400.0054
CYS 7410.0053
PHE 7420.0066
ARG 7430.0086
VAL 7440.0107
ASP 7450.0135
GLU 7460.0149

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.