CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  TRANSPORT PROTEIN 17-DEC-20 7L2L  ***

<R2> analysis for 2602251019571912004

---  normal mode 9  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0523
VAL 2830.0203
GLY 2840.0190
ASN 2850.0161
THR 2860.0146
VAL 2870.0138
LEU 2880.0109
HIS 2890.0118
ALA 2900.0140
LEU 2910.0121
VAL 2920.0109
GLU 2930.0136
VAL 2940.0149
ALA 2950.0134
ASP 2960.0146
ASN 2970.0132
THR 2980.0157
VAL 2990.0154
ASP 3000.0163
ASN 3010.0149
THR 3020.0122
LYS 3030.0121
PHE 3040.0129
VAL 3050.0112
THR 3060.0088
SER 3070.0097
MET 3080.0103
TYR 3090.0077
ASN 3100.0062
GLU 3110.0081
ILE 3120.0088
LEU 3130.0061
ILE 3140.0055
LEU 3150.0085
GLY 3160.0091
ALA 3170.0074
LYS 3180.0083
LEU 3190.0114
HIS 3200.0122
PRO 3210.0107
THR 3220.0131
LEU 3230.0125
LYS 3240.0100
LEU 3250.0092
GLU 3260.0076
GLU 3270.0095
ILE 3280.0115
THR 3290.0122
ASN 3300.0137
ARG 3310.0162
LYS 3320.0143
GLY 3330.0127
LEU 3340.0101
THR 3350.0087
PRO 3360.0081
LEU 3370.0054
ALA 3380.0061
LEU 3390.0086
ALA 3400.0077
ALA 3410.0060
SER 3420.0076
SER 3430.0098
GLY 3440.0091
LYS 3450.0095
ILE 3460.0084
GLY 3470.0091
VAL 3480.0076
LEU 3490.0054
ALA 3500.0060
TYR 3510.0055
ILE 3520.0031
LEU 3530.0019
GLN 3540.0039
ARG 3550.0025
GLU 3560.0032
ILE 3570.0019
HIS 3580.0041
GLU 3590.0027
PRO 3600.0043
GLU 3610.0059
CYS 3620.0041
ARG 3630.0047
HIS 3640.0064
LEU 3650.0043
SER 3660.0028
ARG 3670.0023
LYS 3680.0045
PHE 3690.0068
THR 3700.0095
GLU 3710.0123
TRP 3720.0146
ALA 3730.0146
TYR 3740.0173
GLY 3750.0182
PRO 3760.0180
VAL 3770.0157
HIS 3780.0132
SER 3790.0124
SER 3800.0093
LEU 3810.0082
TYR 3820.0055
ASP 3830.0051
LEU 3840.0048
SER 3850.0056
CYS 3860.0053
ILE 3870.0029
ASP 3880.0041
THR 3890.0067
CYS 3900.0073
GLU 3910.0095
LYS 3920.0096
ASN 3930.0072
SER 3940.0044
VAL 3950.0026
LEU 3960.0012
GLU 3970.0032
VAL 3980.0049
ILE 3990.0043
ALA 4000.0032
TYR 4010.0044
SER 4020.0061
SER 4030.0082
SER 4040.0083
GLU 4050.0107
THR 4060.0095
PRO 4070.0109
ASN 4080.0093
ARG 4090.0071
HIS 4100.0080
ASP 4110.0084
MET 4120.0067
LEU 4130.0055
LEU 4140.0074
VAL 4150.0064
GLU 4160.0068
PRO 4170.0047
LEU 4180.0035
ASN 4190.0059
ARG 4200.0069
LEU 4210.0053
LEU 4220.0048
GLN 4230.0073
ASP 4240.0082
LYS 4250.0068
TRP 4260.0068
ASP 4270.0094
ARG 4280.0099
PHE 4290.0087
VAL 4300.0065
LYS 4310.0076
ARG 4320.0086
ILE 4330.0067
PHE 4340.0052
TYR 4350.0068
PHE 4360.0065
ASN 4370.0043
PHE 4380.0047
PHE 4390.0059
VAL 4400.0046
TYR 4410.0030
CYS 4420.0044
LEU 4430.0042
TYR 4440.0023
MET 4450.0025
ILE 4460.0034
ILE 4470.0020
PHE 4480.0016
THR 4490.0030
ALA 4500.0022
ALA 4510.0021
ALA 4520.0039
TYR 4530.0044
TYR 4540.0034
ARG 4550.0052
PRO 4560.0067
VAL 4570.0087
GLU 4580.0104
GLY 4590.0127
LEU 4600.0136
PRO 4610.0118
PRO 4620.0113
TYR 4630.0104
LYS 4640.0108
LEU 4650.0093
LYS 4660.0086
ASN 4670.0091
THR 4680.0067
VAL 4690.0064
GLY 4700.0040
ASP 4710.0053
TYR 4720.0067
PHE 4730.0049
ARG 4740.0038
VAL 4750.0059
THR 4760.0059
GLY 4770.0036
GLU 4780.0045
ILE 4790.0061
LEU 4800.0047
SER 4810.0031
VAL 4820.0050
SER 4830.0052
GLY 4840.0031
GLY 4850.0039
VAL 4860.0054
TYR 4870.0041
PHE 4880.0030
PHE 4890.0048
PHE 4900.0052
ARG 4910.0036
GLY 4920.0040
ILE 4930.0056
GLN 4940.0049
TYR 4950.0037
PHE 4960.0053
LEU 4970.0061
GLN 4980.0050
ARG 4990.0049
ARG 5000.0064
PRO 5010.0064
SER 5020.0083
LEU 5030.0093
LYS 5040.0102
SER 5050.0083
LEU 5060.0070
PHE 5070.0071
VAL 5080.0076
ASP 5090.0060
SER 5100.0048
TYR 5110.0059
SER 5120.0047
GLU 5130.0033
ILE 5140.0051
LEU 5150.0052
PHE 5160.0036
PHE 5170.0046
VAL 5180.0062
GLN 5190.0050
SER 5200.0048
LEU 5210.0070
PHE 5220.0073
MET 5230.0060
LEU 5240.0076
VAL 5250.0094
SER 5260.0086
VAL 5270.0089
VAL 5280.0112
LEU 5290.0119
TYR 5300.0106
PHE 5310.0123
SER 5320.0142
GLN 5330.0142
ARG 5340.0137
LYS 5350.0124
GLU 5360.0123
TYR 5370.0101
VAL 5380.0091
ALA 5390.0104
SER 5400.0091
MET 5410.0068
VAL 5420.0072
PHE 5430.0078
SER 5440.0057
LEU 5450.0050
ALA 5460.0068
MET 5470.0060
GLY 5480.0041
TRP 5490.0053
THR 5500.0063
ASN 5510.0048
MET 5520.0051
LEU 5530.0062
TYR 5540.0048
TYR 5550.0050
THR 5560.0066
ARG 5570.0062
GLY 5580.0061
PHE 5590.0075
GLN 5600.0085
GLN 5610.0099
MET 5620.0087
GLY 5630.0076
ILE 5640.0090
TYR 5650.0089
ALA 5660.0076
VAL 5670.0078
MET 5680.0085
ILE 5690.0084
GLU 5700.0082
LYS 5710.0089
MET 5720.0076
ILE 5730.0091
LEU 5740.0086
ARG 5750.0069
ASP 5760.0051
LEU 5770.0083
CYS 5780.0141
ARG 5790.0129
PHE 5800.0084
MET 5810.0138
PHE 5820.0247
VAL 5830.0236
TYR 5840.0125
LEU 5850.0230
VAL 5860.0334
PHE 5870.0255
LEU 5880.0171
PHE 5890.0334
GLY 5900.0402
PHE 5910.0300
SER 5920.0276
THR 5930.0438
ALA 5940.0422
VAL 5950.0284
VAL 5960.0363
THR 5970.0495
LEU 5980.0414
ILE 5990.0315
GLU 6000.0406
ASP 6010.0412
SER 6260.0465
TYR 6270.0358
ASN 6280.0442
SER 6290.0523
LEU 6300.0476
TYR 6310.0492
SER 6320.0411
THR 6330.0261
CYS 6340.0280
LEU 6350.0321
GLU 6360.0222
LEU 6370.0093
PHE 6380.0187
LYS 6390.0299
PHE 6400.0262
THR 6410.0255
ILE 6420.0410
GLY 6430.0479
MET 6440.0473
GLY 6450.0330
ASP 6460.0355
LEU 6470.0286
GLU 6480.0250
PHE 6490.0207
THR 6500.0113
GLU 6510.0064
ASN 6520.0146
TYR 6530.0220
ASP 6540.0342
PHE 6550.0444
LYS 6560.0370
ALA 6570.0519
VAL 6580.0489
PHE 6590.0316
ILE 6600.0372
ILE 6610.0489
LEU 6620.0377
LEU 6630.0268
LEU 6640.0421
ALA 6650.0440
TYR 6660.0282
VAL 6670.0316
ILE 6680.0445
LEU 6690.0375
THR 6700.0239
TYR 6710.0312
ILE 6720.0444
LEU 6730.0422
LEU 6740.0269
LEU 6750.0251
ASN 6760.0364
MET 6770.0284
LEU 6780.0162
ILE 6790.0220
ALA 6800.0213
LEU 6810.0141
MET 6820.0077
GLY 6830.0089
GLU 6840.0065
THR 6850.0041
VAL 6860.0025
ASN 6870.0036
LYS 6880.0070
ILE 6890.0081
ALA 6900.0081
GLN 6910.0098
GLU 6920.0092
SER 6930.0086
LYS 6940.0088
ASN 6950.0083
ILE 6960.0074
TRP 6970.0071
LYS 6980.0062
LEU 6990.0051
GLN 7000.0045
ARG 7010.0042
ALA 7020.0026
ILE 7030.0015
THR 7040.0018
ILE 7050.0027
LEU 7060.0018
ASP 7070.0023
THR 7080.0040
GLU 7090.0051
LYS 7100.0052
SER 7110.0061
PHE 7120.0076
LEU 7130.0093
LYS 7140.0120
CYS 7150.0132
MET 7160.0134
ARG 7170.0117
LYS 7180.0124
ALA 7190.0099
PHE 7200.0093
ARG 7210.0086
SER 7220.0104
GLY 7230.0111
LYS 7240.0138
LEU 7250.0140
LEU 7260.0129
TYR 7380.0115
ARG 7390.0093
TRP 7400.0092
CYS 7410.0089
PHE 7420.0084
ARG 7430.0100
VAL 7440.0099
ASP 7450.0126
GLU 7460.0126

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.