CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  TRANSPORT PROTEIN 17-DEC-20 7L2L  ***

<R2> analysis for 2602251020031912105

---  normal mode 40  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0628
VAL 2830.0168
GLY 2840.0066
ASN 2850.0074
THR 2860.0091
VAL 2870.0097
LEU 2880.0088
HIS 2890.0080
ALA 2900.0087
LEU 2910.0084
VAL 2920.0069
GLU 2930.0072
VAL 2940.0082
ALA 2950.0069
ASP 2960.0071
ASN 2970.0041
THR 2980.0093
VAL 2990.0097
ASP 3000.0097
ASN 3010.0063
THR 3020.0015
LYS 3030.0015
PHE 3040.0051
VAL 3050.0060
THR 3060.0058
SER 3070.0071
MET 3080.0076
TYR 3090.0074
ASN 3100.0067
GLU 3110.0066
ILE 3120.0053
LEU 3130.0031
ILE 3140.0018
LEU 3150.0022
GLY 3160.0020
ALA 3170.0045
LYS 3180.0060
LEU 3190.0091
HIS 3200.0088
PRO 3210.0098
THR 3220.0128
LEU 3230.0078
LYS 3240.0067
LEU 3250.0051
GLU 3260.0073
GLU 3270.0073
ILE 3280.0077
THR 3290.0051
ASN 3300.0059
ARG 3310.0209
LYS 3320.0218
GLY 3330.0111
LEU 3340.0061
THR 3350.0063
PRO 3360.0078
LEU 3370.0060
ALA 3380.0050
LEU 3390.0052
ALA 3400.0045
ALA 3410.0038
SER 3420.0039
SER 3430.0043
GLY 3440.0025
LYS 3450.0030
ILE 3460.0013
GLY 3470.0015
VAL 3480.0034
LEU 3490.0031
ALA 3500.0027
TYR 3510.0035
ILE 3520.0036
LEU 3530.0033
GLN 3540.0033
ARG 3550.0037
GLU 3560.0026
ILE 3570.0023
HIS 3580.0054
GLU 3590.0087
PRO 3600.0119
GLU 3610.0060
CYS 3620.0036
ARG 3630.0045
HIS 3640.0053
LEU 3650.0044
SER 3660.0048
ARG 3670.0023
LYS 3680.0025
PHE 3690.0030
THR 3700.0063
GLU 3710.0084
TRP 3720.0079
ALA 3730.0147
TYR 3740.0079
GLY 3750.0150
PRO 3760.0188
VAL 3770.0128
HIS 3780.0052
SER 3790.0027
SER 3800.0016
LEU 3810.0031
TYR 3820.0014
ASP 3830.0012
LEU 3840.0020
SER 3850.0032
CYS 3860.0043
ILE 3870.0038
ASP 3880.0044
THR 3890.0047
CYS 3900.0044
GLU 3910.0030
LYS 3920.0029
ASN 3930.0044
SER 3940.0044
VAL 3950.0038
LEU 3960.0040
GLU 3970.0039
VAL 3980.0036
ILE 3990.0039
ALA 4000.0078
TYR 4010.0063
SER 4020.0053
SER 4030.0082
SER 4040.0091
GLU 4050.0093
THR 4060.0055
PRO 4070.0057
ASN 4080.0039
ARG 4090.0022
HIS 4100.0024
ASP 4110.0035
MET 4120.0005
LEU 4130.0019
LEU 4140.0021
VAL 4150.0023
GLU 4160.0021
PRO 4170.0017
LEU 4180.0019
ASN 4190.0027
ARG 4200.0014
LEU 4210.0034
LEU 4220.0041
GLN 4230.0056
ASP 4240.0052
LYS 4250.0060
TRP 4260.0074
ASP 4270.0071
ARG 4280.0068
PHE 4290.0077
VAL 4300.0099
LYS 4310.0123
ARG 4320.0160
ILE 4330.0142
PHE 4340.0119
TYR 4350.0151
PHE 4360.0214
ASN 4370.0158
PHE 4380.0121
PHE 4390.0189
VAL 4400.0189
TYR 4410.0094
CYS 4420.0065
LEU 4430.0095
TYR 4440.0078
MET 4450.0030
ILE 4460.0029
ILE 4470.0032
PHE 4480.0076
THR 4490.0083
ALA 4500.0058
ALA 4510.0135
ALA 4520.0083
TYR 4530.0103
TYR 4540.0158
ARG 4550.0141
PRO 4560.0214
VAL 4570.0274
GLU 4580.0197
GLY 4590.0111
LEU 4600.0217
PRO 4610.0205
PRO 4620.0362
TYR 4630.0260
LYS 4640.0381
LEU 4650.0298
LYS 4660.0272
ASN 4670.0379
THR 4680.0346
VAL 4690.0575
GLY 4700.0510
ASP 4710.0236
TYR 4720.0330
PHE 4730.0366
ARG 4740.0242
VAL 4750.0169
THR 4760.0181
GLY 4770.0128
GLU 4780.0178
ILE 4790.0209
LEU 4800.0149
SER 4810.0107
VAL 4820.0140
SER 4830.0165
GLY 4840.0151
GLY 4850.0185
VAL 4860.0224
TYR 4870.0232
PHE 4880.0212
PHE 4890.0273
PHE 4900.0284
ARG 4910.0207
GLY 4920.0245
ILE 4930.0283
GLN 4940.0208
TYR 4950.0188
PHE 4960.0270
LEU 4970.0322
GLN 4980.0295
ARG 4990.0387
ARG 5000.0519
PRO 5010.0481
SER 5020.0320
LEU 5030.0437
LYS 5040.0477
SER 5050.0166
LEU 5060.0124
PHE 5070.0152
VAL 5080.0195
ASP 5090.0159
SER 5100.0162
TYR 5110.0122
SER 5120.0132
GLU 5130.0121
ILE 5140.0162
LEU 5150.0179
PHE 5160.0168
PHE 5170.0250
VAL 5180.0256
GLN 5190.0212
SER 5200.0228
LEU 5210.0252
PHE 5220.0204
MET 5230.0182
LEU 5240.0192
VAL 5250.0112
SER 5260.0103
VAL 5270.0290
VAL 5280.0332
LEU 5290.0333
TYR 5300.0278
PHE 5310.0530
SER 5320.0628
GLN 5330.0505
ARG 5340.0418
LYS 5350.0236
GLU 5360.0277
TYR 5370.0096
VAL 5380.0074
ALA 5390.0097
SER 5400.0079
MET 5410.0127
VAL 5420.0143
PHE 5430.0183
SER 5440.0179
LEU 5450.0135
ALA 5460.0169
MET 5470.0170
GLY 5480.0113
TRP 5490.0091
THR 5500.0128
ASN 5510.0096
MET 5520.0038
LEU 5530.0052
TYR 5540.0021
TYR 5550.0044
THR 5560.0067
ARG 5570.0052
GLY 5580.0073
PHE 5590.0096
GLN 5600.0092
GLN 5610.0110
MET 5620.0092
GLY 5630.0074
ILE 5640.0072
TYR 5650.0058
ALA 5660.0049
VAL 5670.0025
MET 5680.0008
ILE 5690.0044
GLU 5700.0068
LYS 5710.0062
MET 5720.0080
ILE 5730.0100
LEU 5740.0111
ARG 5750.0115
ASP 5760.0122
LEU 5770.0146
CYS 5780.0146
ARG 5790.0144
PHE 5800.0123
MET 5810.0128
PHE 5820.0117
VAL 5830.0057
TYR 5840.0049
LEU 5850.0072
VAL 5860.0060
PHE 5870.0040
LEU 5880.0042
PHE 5890.0062
GLY 5900.0070
PHE 5910.0058
SER 5920.0047
THR 5930.0049
ALA 5940.0045
VAL 5950.0020
VAL 5960.0031
THR 5970.0022
LEU 5980.0026
ILE 5990.0037
GLU 6000.0064
ASP 6010.0095
SER 6260.0076
TYR 6270.0055
ASN 6280.0067
SER 6290.0070
LEU 6300.0056
TYR 6310.0085
SER 6320.0056
THR 6330.0039
CYS 6340.0059
LEU 6350.0049
GLU 6360.0042
LEU 6370.0046
PHE 6380.0040
LYS 6390.0040
PHE 6400.0040
THR 6410.0023
ILE 6420.0032
GLY 6430.0027
MET 6440.0054
GLY 6450.0047
ASP 6460.0050
LEU 6470.0045
GLU 6480.0034
PHE 6490.0029
THR 6500.0011
GLU 6510.0025
ASN 6520.0044
TYR 6530.0038
ASP 6540.0055
PHE 6550.0056
LYS 6560.0047
ALA 6570.0050
VAL 6580.0020
PHE 6590.0015
ILE 6600.0032
ILE 6610.0031
LEU 6620.0040
LEU 6630.0042
LEU 6640.0043
ALA 6650.0060
TYR 6660.0047
VAL 6670.0040
ILE 6680.0059
LEU 6690.0042
THR 6700.0023
TYR 6710.0037
ILE 6720.0075
LEU 6730.0087
LEU 6740.0081
LEU 6750.0120
ASN 6760.0153
MET 6770.0148
LEU 6780.0164
ILE 6790.0204
ALA 6800.0171
LEU 6810.0169
MET 6820.0181
GLY 6830.0173
GLU 6840.0175
THR 6850.0166
VAL 6860.0139
ASN 6870.0131
LYS 6880.0128
ILE 6890.0095
ALA 6900.0091
GLN 6910.0076
GLU 6920.0068
SER 6930.0070
LYS 6940.0073
ASN 6950.0056
ILE 6960.0049
TRP 6970.0061
LYS 6980.0047
LEU 6990.0035
GLN 7000.0044
ARG 7010.0054
ALA 7020.0044
ILE 7030.0042
THR 7040.0061
ILE 7050.0057
LEU 7060.0056
ASP 7070.0063
THR 7080.0058
GLU 7090.0063
LYS 7100.0081
SER 7110.0075
PHE 7120.0065
LEU 7130.0342
LYS 7140.0408
CYS 7150.0500
MET 7160.0192
ARG 7170.0178
LYS 7180.0068
ALA 7190.0049
PHE 7200.0054
ARG 7210.0057
SER 7220.0016
GLY 7230.0039
LYS 7240.0107
LEU 7250.0158
LEU 7260.0216
TYR 7380.0124
ARG 7390.0072
TRP 7400.0033
CYS 7410.0030
PHE 7420.0029
ARG 7430.0048
VAL 7440.0042
ASP 7450.0056
GLU 7460.0070

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.