CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  Alexa_Lyz  ***

Normal Mode Analysis for ID 2603020356513024602

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 2 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0764
mode 8 1.07 0.2039
mode 9 1.21 0.3813
mode 10 1.56 0.4528
mode 11 1.80 0.0608
mode 12 2.07 0.4653
mode 13 2.16 0.5228
mode 14 2.17 0.4026
mode 15 2.32 0.2889
mode 16 2.44 0.3387
mode 17 2.50 0.4230
mode 18 2.56 0.2561
mode 19 2.72 0.3455
mode 20 2.80 0.3314
mode 21 2.85 0.2729
mode 22 2.90 0.5115
mode 23 2.96 0.4470
mode 24 3.01 0.3263
mode 25 3.04 0.3955
mode 26 3.11 0.3148
mode 27 3.17 0.4363
mode 28 3.24 0.4645
mode 29 3.28 0.3507
mode 30 3.34 0.6030
mode 31 3.37 0.2138
mode 32 3.40 0.3174
mode 33 3.50 0.1528
mode 34 3.54 0.3784
mode 35 3.58 0.4334
mode 36 3.62 0.5219
mode 37 3.68 0.4516
mode 38 3.72 0.4368
mode 39 3.79 0.3597
mode 40 3.81 0.3723
mode 41 3.89 0.2968
mode 42 3.90 0.2259
mode 43 3.93 0.3224
mode 44 4.01 0.2493
mode 45 4.02 0.2752
mode 46 4.05 0.3438
mode 47 4.08 0.3057
mode 48 4.12 0.4131
mode 49 4.13 0.3138
mode 50 4.23 0.4390
mode 51 4.23 0.3964
mode 52 4.28 0.4831
mode 53 4.34 0.3559
mode 54 4.36 0.2817
mode 55 4.38 0.2295
mode 56 4.41 0.4416
mode 57 4.44 0.5552
mode 58 4.45 0.3312
mode 59 4.51 0.3418
mode 60 4.51 0.3877
mode 61 4.55 0.3379
mode 62 4.56 0.2068
mode 63 4.62 0.1892
mode 64 4.63 0.2943
mode 65 4.67 0.1228
mode 66 4.68 0.1826
mode 67 4.70 0.3866
mode 68 4.72 0.3747
mode 69 4.75 0.2383
mode 70 4.78 0.2182
mode 71 4.79 0.3298
mode 72 4.84 0.3882
mode 73 4.84 0.2834
mode 74 4.86 0.0605
mode 75 4.90 0.2894
mode 76 4.90 0.3299
mode 77 4.94 0.3975
mode 78 4.96 0.3297
mode 79 4.98 0.3157
mode 80 5.03 0.1527
mode 81 5.04 0.3146
mode 82 5.07 0.4465
mode 83 5.08 0.4439
mode 84 5.12 0.3965
mode 85 5.13 0.3042
mode 86 5.15 0.3309
mode 87 5.16 0.3966
mode 88 5.21 0.2403
mode 89 5.22 0.3941
mode 90 5.23 0.2586
mode 91 5.27 0.2308
mode 92 5.29 0.1958
mode 93 5.33 0.4671
mode 94 5.36 0.0780
mode 95 5.38 0.3669
mode 96 5.39 0.3729
mode 97 5.40 0.3464
mode 98 5.43 0.3660
mode 99 5.45 0.3364
mode 100 5.47 0.2954
mode 101 5.49 0.3654
mode 102 5.52 0.4206
mode 103 5.53 0.2360
mode 104 5.58 0.2227
mode 105 5.59 0.3292
mode 106 5.61 0.3663

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.