CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***    ***

Normal Mode Analysis for ID 2603132012352609600

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 2 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0912
mode 8 1.14 0.0579
mode 9 1.33 0.3667
mode 10 1.51 0.4840
mode 11 1.56 0.3239
mode 12 1.70 0.2811
mode 13 1.75 0.2497
mode 14 1.97 0.2637
mode 15 2.06 0.2578
mode 16 2.15 0.2807
mode 17 2.17 0.2001
mode 18 2.23 0.3360
mode 19 2.29 0.1908
mode 20 2.42 0.3370
mode 21 2.50 0.3074
mode 22 2.61 0.3164
mode 23 2.66 0.4454
mode 24 2.76 0.3362
mode 25 2.85 0.4910
mode 26 2.90 0.2980
mode 27 2.97 0.5706
mode 28 3.00 0.3258
mode 29 3.13 0.3509
mode 30 3.25 0.5276
mode 31 3.34 0.5904
mode 32 3.41 0.3643
mode 33 3.47 0.3000
mode 34 3.52 0.5221
mode 35 3.56 0.5571
mode 36 3.63 0.3165
mode 37 3.67 0.5478
mode 38 3.72 0.3506
mode 39 3.78 0.3670
mode 40 3.83 0.3957
mode 41 3.85 0.0877
mode 42 3.88 0.2527
mode 43 4.01 0.5647
mode 44 4.04 0.4508
mode 45 4.09 0.3255
mode 46 4.14 0.4334
mode 47 4.16 0.2747
mode 48 4.22 0.3767
mode 49 4.24 0.2444
mode 50 4.27 0.2074
mode 51 4.32 0.4215
mode 52 4.42 0.3626
mode 53 4.46 0.2959
mode 54 4.50 0.3499
mode 55 4.51 0.4177
mode 56 4.54 0.4494
mode 57 4.62 0.2488
mode 58 4.72 0.2810
mode 59 4.76 0.4877
mode 60 4.79 0.3209
mode 61 4.83 0.4359
mode 62 4.90 0.3812
mode 63 4.93 0.4864
mode 64 5.04 0.4587
mode 65 5.09 0.2942
mode 66 5.11 0.4337
mode 67 5.15 0.2716
mode 68 5.16 0.3386
mode 69 5.20 0.4017
mode 70 5.21 0.4399
mode 71 5.25 0.4179
mode 72 5.27 0.4569
mode 73 5.32 0.3554
mode 74 5.36 0.3887
mode 75 5.42 0.4054
mode 76 5.46 0.4186
mode 77 5.48 0.5182
mode 78 5.54 0.3837
mode 79 5.56 0.4308
mode 80 5.56 0.4532
mode 81 5.59 0.2731
mode 82 5.63 0.3377
mode 83 5.68 0.4673
mode 84 5.73 0.4086
mode 85 5.76 0.3965
mode 86 5.78 0.2772
mode 87 5.83 0.4850
mode 88 5.89 0.4604
mode 89 5.90 0.4170
mode 90 5.93 0.4254
mode 91 5.97 0.4595
mode 92 5.98 0.4449
mode 93 6.00 0.4018
mode 94 6.03 0.4496
mode 95 6.08 0.4191
mode 96 6.13 0.4368
mode 97 6.16 0.2864
mode 98 6.19 0.4911
mode 99 6.24 0.4345
mode 100 6.28 0.2171
mode 101 6.31 0.5146
mode 102 6.33 0.5003
mode 103 6.36 0.5078
mode 104 6.38 0.4784
mode 105 6.43 0.4782
mode 106 6.47 0.4731

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.