CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  MEMBRANE PROTEIN 26-MAR-24 8YU7  ***

Normal Mode Analysis for ID 2603180307243691338

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 1 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0909
mode 8 1.17 0.5797
mode 9 1.20 0.2086
mode 10 1.34 0.3407
mode 11 1.52 0.2449
mode 12 1.64 0.3535
mode 13 1.93 0.3283
mode 14 2.00 0.4280
mode 15 2.11 0.2536
mode 16 2.15 0.2205
mode 17 2.30 0.3982
mode 18 2.31 0.3659
mode 19 2.44 0.4751
mode 20 2.54 0.4435
mode 21 2.63 0.4735
mode 22 2.68 0.3887
mode 23 2.74 0.4550
mode 24 2.78 0.5567
mode 25 2.89 0.2839
mode 26 2.91 0.3144
mode 27 2.99 0.4649
mode 28 3.10 0.3693
mode 29 3.14 0.1079
mode 30 3.23 0.5465
mode 31 3.35 0.1821
mode 32 3.43 0.3499
mode 33 3.50 0.2919
mode 34 3.59 0.3512
mode 35 3.60 0.5614
mode 36 3.67 0.3609
mode 37 3.82 0.2963
mode 38 3.88 0.5935
mode 39 3.89 0.3576
mode 40 3.93 0.5239
mode 41 4.07 0.3740
mode 42 4.14 0.3309
mode 43 4.17 0.5762
mode 44 4.22 0.4433
mode 45 4.29 0.5284
mode 46 4.32 0.5407
mode 47 4.37 0.5788
mode 48 4.53 0.5866
mode 49 4.58 0.6013
mode 50 4.61 0.4505
mode 51 4.68 0.4460
mode 52 4.77 0.4968
mode 53 4.83 0.5384
mode 54 4.92 0.3780
mode 55 4.98 0.5216
mode 56 5.03 0.4514
mode 57 5.04 0.4803
mode 58 5.10 0.3851
mode 59 5.15 0.4638
mode 60 5.21 0.5376
mode 61 5.24 0.5312
mode 62 5.29 0.5330
mode 63 5.30 0.4964
mode 64 5.33 0.5362
mode 65 5.36 0.3499
mode 66 5.41 0.4155
mode 67 5.47 0.0749
mode 68 5.54 0.5602
mode 69 5.58 0.2887
mode 70 5.62 0.4864
mode 71 5.68 0.5883
mode 72 5.70 0.2796
mode 73 5.80 0.5293
mode 74 5.86 0.4609
mode 75 5.92 0.4899
mode 76 5.99 0.4261
mode 77 6.03 0.5175
mode 78 6.05 0.5261
mode 79 6.12 0.3309
mode 80 6.17 0.4718
mode 81 6.20 0.4799
mode 82 6.23 0.2786
mode 83 6.32 0.5013
mode 84 6.33 0.6062
mode 85 6.34 0.3453
mode 86 6.41 0.5888
mode 87 6.42 0.4618
mode 88 6.52 0.3539
mode 89 6.54 0.4692
mode 90 6.58 0.4575
mode 91 6.62 0.4517
mode 92 6.62 0.5239
mode 93 6.64 0.4798
mode 94 6.71 0.5416
mode 95 6.76 0.4445
mode 96 6.79 0.4567
mode 97 6.82 0.3137
mode 98 6.84 0.2739
mode 99 6.90 0.4149
mode 100 6.95 0.4893
mode 101 6.98 0.4562
mode 102 7.01 0.3388
mode 103 7.05 0.2915
mode 104 7.06 0.4190
mode 105 7.14 0.4556
mode 106 7.19 0.5343

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.