CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***    ***

Normal Mode Analysis for ID 2603271630402469162

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 5 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0253
mode 8 1.66 0.0211
mode 9 4.60 0.0130
mode 10 5.89 0.0264
mode 11 7.15 0.0319
mode 12 11.55 0.0342
mode 13 12.00 0.1095
mode 14 13.05 0.2920
mode 15 14.01 0.3441
mode 16 15.84 0.0260
mode 17 16.76 0.0436
mode 18 17.77 0.3170
mode 19 18.06 0.2275
mode 20 18.57 0.3338
mode 21 19.06 0.1385
mode 22 19.49 0.1643
mode 23 20.77 0.2117
mode 24 20.91 0.3488
mode 25 21.51 0.0496
mode 26 21.88 0.3297
mode 27 22.63 0.3516
mode 28 22.98 0.1204
mode 29 23.25 0.2533
mode 30 24.02 0.1667
mode 31 24.56 0.1453
mode 32 24.87 0.4219
mode 33 25.26 0.4765
mode 34 25.92 0.4197
mode 35 25.95 0.1845
mode 36 26.40 0.1561
mode 37 26.60 0.4582
mode 38 26.92 0.4977
mode 39 27.05 0.2265
mode 40 27.88 0.3736
mode 41 28.25 0.2187
mode 42 28.73 0.4781
mode 43 29.21 0.4903
mode 44 29.60 0.4533
mode 45 30.03 0.4572
mode 46 30.79 0.4348
mode 47 31.43 0.3477
mode 48 31.60 0.3437
mode 49 31.80 0.3235
mode 50 32.70 0.2359
mode 51 33.01 0.2757
mode 52 33.48 0.2393
mode 53 33.79 0.2233
mode 54 34.11 0.2413
mode 55 34.56 0.2903
mode 56 34.72 0.2434
mode 57 35.00 0.1892
mode 58 35.40 0.5340
mode 59 35.96 0.3407
mode 60 36.24 0.3172
mode 61 36.91 0.5268
mode 62 37.09 0.4015
mode 63 37.67 0.3701
mode 64 38.01 0.4010
mode 65 38.42 0.4558
mode 66 38.67 0.3572
mode 67 38.79 0.5106
mode 68 39.04 0.3861
mode 69 39.18 0.3967
mode 70 39.56 0.5522
mode 71 40.03 0.5118
mode 72 40.16 0.5068
mode 73 40.34 0.3719
mode 74 40.80 0.3572
mode 75 40.99 0.1486
mode 76 41.47 0.2855
mode 77 42.02 0.4721
mode 78 42.14 0.3187
mode 79 42.28 0.4599
mode 80 42.39 0.2483
mode 81 42.93 0.1830
mode 82 43.19 0.2243
mode 83 43.85 0.3686
mode 84 44.33 0.3259
mode 85 44.48 0.4782
mode 86 44.66 0.2010
mode 87 44.90 0.4576
mode 88 45.31 0.3025
mode 89 45.62 0.4898
mode 90 45.72 0.3795
mode 91 46.06 0.4456
mode 92 46.28 0.2726
mode 93 46.43 0.3705
mode 94 46.64 0.4152
mode 95 46.87 0.4193
mode 96 46.98 0.4320
mode 97 47.14 0.4951
mode 98 47.83 0.4973
mode 99 47.97 0.2700
mode 100 48.30 0.2304
mode 101 48.74 0.3792
mode 102 49.03 0.3814
mode 103 49.20 0.4436
mode 104 49.57 0.4562
mode 105 49.75 0.3049
mode 106 49.84 0.4377

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.