CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  WP_011044792.1  ***

Normal Mode Analysis for ID 260407192227468946

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 5 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0173
mode 8 1.27 0.0178
mode 9 2.93 0.0074
mode 10 4.58 0.0259
mode 11 5.56 0.0212
mode 12 7.46 0.1422
mode 13 8.52 0.3816
mode 14 9.37 0.0322
mode 15 9.39 0.4153
mode 16 10.23 0.2451
mode 17 10.91 0.3749
mode 18 11.70 0.4439
mode 19 12.54 0.0453
mode 20 12.85 0.3610
mode 21 13.78 0.4987
mode 22 15.12 0.4166
mode 23 15.42 0.5686
mode 24 15.88 0.4570
mode 25 15.96 0.0146
mode 26 16.33 0.5965
mode 27 16.93 0.5605
mode 28 17.47 0.5957
mode 29 17.76 0.2952
mode 30 18.29 0.2556
mode 31 18.33 0.2629
mode 32 18.54 0.3999
mode 33 19.05 0.5307
mode 34 19.38 0.4523
mode 35 20.02 0.3848
mode 36 20.47 0.3248
mode 37 20.85 0.4375
mode 38 21.07 0.4795
mode 39 21.44 0.3023
mode 40 21.60 0.5234
mode 41 21.71 0.3223
mode 42 22.30 0.5076
mode 43 22.58 0.4890
mode 44 22.88 0.4701
mode 45 23.08 0.4239
mode 46 23.40 0.5432
mode 47 23.55 0.4545
mode 48 23.94 0.3793
mode 49 23.98 0.3884
mode 50 24.23 0.2397
mode 51 24.60 0.4263
mode 52 24.89 0.4263
mode 53 25.17 0.5230
mode 54 25.38 0.4654
mode 55 25.76 0.3060
mode 56 25.78 0.3590
mode 57 26.19 0.4030
mode 58 26.42 0.4906
mode 59 26.56 0.4040
mode 60 26.68 0.4208
mode 61 27.01 0.3699
mode 62 27.20 0.4752
mode 63 27.34 0.5836
mode 64 27.98 0.2330
mode 65 28.10 0.3798
mode 66 28.15 0.4982
mode 67 28.46 0.3554
mode 68 28.51 0.2635
mode 69 28.74 0.2202
mode 70 29.09 0.4678
mode 71 29.16 0.4155
mode 72 29.34 0.4404
mode 73 29.51 0.3688
mode 74 29.67 0.4215
mode 75 30.03 0.4024
mode 76 30.23 0.3861
mode 77 30.40 0.3978
mode 78 30.64 0.4434
mode 79 30.80 0.4833
mode 80 30.88 0.4060
mode 81 31.11 0.5510
mode 82 31.20 0.5271
mode 83 31.41 0.5568
mode 84 31.48 0.5392
mode 85 31.80 0.5940
mode 86 31.95 0.5658
mode 87 32.15 0.3194
mode 88 32.41 0.5753
mode 89 32.49 0.3955
mode 90 32.60 0.5399
mode 91 32.84 0.2182
mode 92 32.94 0.5416
mode 93 33.21 0.3907
mode 94 33.35 0.5363
mode 95 33.38 0.4404
mode 96 33.72 0.5449
mode 97 33.87 0.3997
mode 98 33.96 0.4370
mode 99 34.23 0.3386
mode 100 34.30 0.3693
mode 101 34.36 0.0812
mode 102 34.44 0.5249
mode 103 34.59 0.5093
mode 104 34.83 0.4548
mode 105 35.22 0.4516
mode 106 35.35 0.4218

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.