CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  extreme1  ***

Normal Mode Analysis for ID 260409133102922495

Conformational change expected to be analysed



The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: Rotation-translation modes have a cumulative overlap of 0.4420 !!! This probably means that the second conformation was not fitted properly onto the first one.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity cumulative overlap amplitude (dq)
mode 7 1.00 0.5445 0.090 -59.9341
mode 8 1.06 0.5373 0.173 57.5334
mode 9 1.25 0.6370 0.263 -59.1907
mode 10 1.34 0.3625 0.263 -2.0422
mode 11 1.53 0.5213 0.266 12.5631
mode 12 1.58 0.3780 0.277 21.8294
mode 13 1.71 0.4060 0.299 -28.3222
mode 14 1.75 0.6084 0.304 -14.5193
mode 15 1.85 0.5138 0.315 -20.9443
mode 16 1.89 0.3616 0.321 -15.4929
mode 17 2.02 0.4123 0.321 -4.4425
mode 18 2.09 0.5845 0.323 -8.1833
mode 19 2.14 0.5525 0.323 -5.7308
mode 20 2.21 0.2105 0.323 -4.8330
mode 21 2.26 0.5472 0.340 24.3825
mode 22 2.31 0.2721 0.343 12.2456
mode 23 2.42 0.4327 0.356 21.9947
mode 24 2.46 0.4798 0.373 26.2983
mode 25 2.52 0.3653 0.378 12.8415
mode 26 2.56 0.3026 0.378 7.6098
mode 27 2.63 0.5206 0.378 0.3885
mode 28 2.64 0.3099 0.378 -2.6972
mode 29 2.76 0.3113 0.378 -5.7521
mode 30 2.83 0.3296 0.384 -12.2367
mode 31 2.84 0.3407 0.389 -15.5618
mode 32 2.92 0.3412 0.392 -11.9631
mode 33 2.95 0.2241 0.395 4.9588
mode 34 2.99 0.3925 0.397 11.9654
mode 35 3.08 0.4841 0.397 -4.2816
mode 36 3.11 0.3954 0.397 -4.4822
mode 37 3.17 0.3973 0.447 43.6319
mode 38 3.19 0.5000 0.449 9.4544
mode 39 3.24 0.3861 0.460 22.6089
mode 40 3.29 0.5174 0.471 18.5835
mode 41 3.30 0.3106 0.490 28.3578
mode 42 3.31 0.4175 0.504 22.6731
mode 43 3.33 0.4363 0.507 -9.7801
mode 44 3.37 0.3830 0.507 -2.6095
mode 45 3.41 0.4547 0.507 -6.8340
mode 46 3.44 0.4466 0.512 -12.5946
mode 47 3.47 0.4451 0.512 8.3328
mode 48 3.51 0.2131 0.512 -0.3390
mode 49 3.55 0.4927 0.515 -6.2341
mode 50 3.62 0.4221 0.515 -4.6426
mode 51 3.64 0.2739 0.521 -15.7673
mode 52 3.65 0.4190 0.521 -0.5563
mode 53 3.69 0.4906 0.521 4.1650
mode 54 3.71 0.4129 0.521 3.6857
mode 55 3.76 0.4111 0.521 1.3505
mode 56 3.78 0.5374 0.523 6.9672
mode 57 3.80 0.4765 0.526 9.0676
mode 58 3.85 0.4726 0.526 3.8282
mode 59 3.92 0.3493 0.526 -9.1077
mode 60 3.94 0.4442 0.529 2.8386
mode 61 3.94 0.4533 0.540 -21.5131
mode 62 3.98 0.4595 0.540 4.9933
mode 63 4.03 0.4494 0.564 31.6681
mode 64 4.06 0.4796 0.575 -21.3693
mode 65 4.08 0.3981 0.578 -6.1242
mode 66 4.11 0.4880 0.586 -18.3534
mode 67 4.16 0.4208 0.586 -2.5039
mode 68 4.18 0.3009 0.589 12.4397
mode 69 4.21 0.4400 0.603 -22.3250
mode 70 4.23 0.3453 0.614 19.5932
mode 71 4.26 0.3754 0.614 9.8073
mode 72 4.29 0.4007 0.622 16.1167
mode 73 4.31 0.4200 0.636 22.9577
mode 74 4.35 0.1369 0.636 -2.1904
mode 75 4.37 0.4836 0.636 9.0800
mode 76 4.39 0.3507 0.638 -3.9985
mode 77 4.39 0.2234 0.638 9.1715
mode 78 4.43 0.3547 0.641 10.0050
mode 79 4.46 0.4737 0.652 -21.2772
mode 80 4.49 0.4703 0.652 -2.0254
mode 81 4.50 0.4825 0.655 5.3233
mode 82 4.51 0.5215 0.660 -15.2521
mode 83 4.54 0.5297 0.660 -6.9674
mode 84 4.55 0.4986 0.663 -8.4123
mode 85 4.57 0.5279 0.666 10.5434
mode 86 4.60 0.5179 0.666 -0.6294
mode 87 4.61 0.4761 0.669 12.6482
mode 88 4.66 0.4277 0.671 -6.8226
mode 89 4.67 0.4745 0.671 -0.2393
mode 90 4.70 0.4891 0.671 5.0299
mode 91 4.71 0.4887 0.671 -1.6277
mode 92 4.74 0.2726 0.671 3.4986
mode 93 4.78 0.5116 0.671 0.2899
mode 94 4.82 0.4677 0.671 -4.5139
mode 95 4.84 0.4079 0.674 -6.8704
mode 96 4.86 0.4304 0.677 12.6970
mode 97 4.88 0.4835 0.677 0.4298
mode 98 4.90 0.3548 0.685 -15.2009
mode 99 4.93 0.3091 0.688 12.0185
mode 100 4.95 0.4104 0.691 12.9054
mode 101 4.97 0.3202 0.691 -1.7430
mode 102 5.02 0.5599 0.693 7.6716
mode 103 5.03 0.4497 0.693 -4.5645
mode 104 5.04 0.4877 0.696 9.8013
mode 105 5.07 0.4688 0.696 2.4834
mode 106 5.09 0.4255 0.696 -6.4634

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.