CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  APOPTOSIS 10-DEC-22 8HOG  ***

Normal Mode Analysis for ID 2604130131011690572

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 2 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0876
mode 8 1.20 0.1850
mode 9 1.27 0.4168
mode 10 1.33 0.0303
mode 11 1.51 0.4846
mode 12 1.57 0.3820
mode 13 1.59 0.3240
mode 14 1.86 0.2388
mode 15 1.89 0.2671
mode 16 1.99 0.3551
mode 17 2.02 0.5284
mode 18 2.12 0.1143
mode 19 2.13 0.2898
mode 20 2.17 0.3675
mode 21 2.22 0.4900
mode 22 2.28 0.1025
mode 23 2.32 0.1992
mode 24 2.36 0.2647
mode 25 2.43 0.2009
mode 26 2.45 0.5443
mode 27 2.51 0.3091
mode 28 2.53 0.3905
mode 29 2.56 0.1568
mode 30 2.62 0.3476
mode 31 2.66 0.3494
mode 32 2.68 0.3570
mode 33 2.69 0.4387
mode 34 2.75 0.4260
mode 35 2.77 0.1828
mode 36 2.80 0.4410
mode 37 2.89 0.4544
mode 38 2.91 0.3046
mode 39 3.02 0.3911
mode 40 3.05 0.4220
mode 41 3.08 0.3844
mode 42 3.12 0.5297
mode 43 3.19 0.5792
mode 44 3.21 0.5695
mode 45 3.25 0.4177
mode 46 3.34 0.4493
mode 47 3.37 0.4026
mode 48 3.37 0.5196
mode 49 3.41 0.3504
mode 50 3.44 0.2999
mode 51 3.48 0.4778
mode 52 3.50 0.4048
mode 53 3.55 0.4172
mode 54 3.57 0.3434
mode 55 3.58 0.2063
mode 56 3.60 0.3358
mode 57 3.62 0.3636
mode 58 3.65 0.5136
mode 59 3.71 0.4826
mode 60 3.71 0.3054
mode 61 3.76 0.3927
mode 62 3.81 0.3229
mode 63 3.83 0.2335
mode 64 3.84 0.3077
mode 65 3.85 0.3540
mode 66 3.88 0.2729
mode 67 3.90 0.2766
mode 68 3.99 0.3980
mode 69 3.99 0.3569
mode 70 4.01 0.4086
mode 71 4.03 0.2121
mode 72 4.05 0.0648
mode 73 4.06 0.4271
mode 74 4.10 0.3613
mode 75 4.13 0.2625
mode 76 4.16 0.2250
mode 77 4.17 0.2655
mode 78 4.19 0.3279
mode 79 4.23 0.3773
mode 80 4.24 0.4075
mode 81 4.27 0.4577
mode 82 4.30 0.3579
mode 83 4.32 0.4213
mode 84 4.35 0.3323
mode 85 4.35 0.3060
mode 86 4.36 0.4414
mode 87 4.40 0.2926
mode 88 4.43 0.4445
mode 89 4.45 0.3899
mode 90 4.48 0.4412
mode 91 4.51 0.4785
mode 92 4.52 0.2858
mode 93 4.54 0.4226
mode 94 4.55 0.4775
mode 95 4.57 0.3214
mode 96 4.59 0.3554
mode 97 4.62 0.3144
mode 98 4.64 0.4071
mode 99 4.66 0.4567
mode 100 4.68 0.3345
mode 101 4.69 0.3940
mode 102 4.73 0.3961
mode 103 4.74 0.4327
mode 104 4.75 0.3640
mode 105 4.78 0.5521
mode 106 4.79 0.4850

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.