CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  APOPTOSIS 10-DEC-22 8HOH  ***

Normal Mode Analysis for ID 2604130138361693829

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 2 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0816
mode 8 1.13 0.4438
mode 9 1.17 0.3353
mode 10 1.35 0.0668
mode 11 1.41 0.3282
mode 12 1.46 0.3390
mode 13 1.53 0.3043
mode 14 1.63 0.0629
mode 15 1.72 0.2621
mode 16 1.80 0.3164
mode 17 1.87 0.3136
mode 18 1.93 0.1408
mode 19 1.96 0.3080
mode 20 2.00 0.5379
mode 21 2.07 0.2441
mode 22 2.13 0.5870
mode 23 2.18 0.4246
mode 24 2.23 0.3564
mode 25 2.27 0.5986
mode 26 2.33 0.3998
mode 27 2.37 0.5141
mode 28 2.42 0.5904
mode 29 2.43 0.4609
mode 30 2.49 0.2468
mode 31 2.54 0.3601
mode 32 2.55 0.2431
mode 33 2.59 0.4237
mode 34 2.66 0.3742
mode 35 2.69 0.4382
mode 36 2.75 0.4127
mode 37 2.78 0.3450
mode 38 2.81 0.3143
mode 39 2.87 0.3679
mode 40 2.89 0.3964
mode 41 2.93 0.4011
mode 42 2.96 0.4019
mode 43 3.02 0.3903
mode 44 3.06 0.3345
mode 45 3.08 0.4672
mode 46 3.10 0.5020
mode 47 3.11 0.4044
mode 48 3.17 0.4026
mode 49 3.24 0.4037
mode 50 3.26 0.3154
mode 51 3.28 0.3958
mode 52 3.31 0.4785
mode 53 3.34 0.2705
mode 54 3.37 0.4062
mode 55 3.39 0.4724
mode 56 3.42 0.2841
mode 57 3.45 0.4497
mode 58 3.48 0.2324
mode 59 3.51 0.3932
mode 60 3.55 0.3397
mode 61 3.57 0.2871
mode 62 3.59 0.2841
mode 63 3.60 0.2671
mode 64 3.64 0.4088
mode 65 3.65 0.4254
mode 66 3.66 0.2108
mode 67 3.69 0.3105
mode 68 3.74 0.2739
mode 69 3.76 0.4980
mode 70 3.78 0.3099
mode 71 3.82 0.2920
mode 72 3.82 0.4271
mode 73 3.85 0.3786
mode 74 3.88 0.2735
mode 75 3.92 0.4200
mode 76 3.93 0.3564
mode 77 3.94 0.2584
mode 78 3.95 0.3142
mode 79 4.00 0.2955
mode 80 4.02 0.4206
mode 81 4.04 0.3046
mode 82 4.07 0.4060
mode 83 4.08 0.4058
mode 84 4.11 0.3225
mode 85 4.13 0.3942
mode 86 4.15 0.3216
mode 87 4.19 0.4410
mode 88 4.22 0.4114
mode 89 4.23 0.3372
mode 90 4.24 0.3728
mode 91 4.27 0.2768
mode 92 4.27 0.0701
mode 93 4.29 0.2421
mode 94 4.31 0.4465
mode 95 4.33 0.1940
mode 96 4.35 0.3744
mode 97 4.36 0.4318
mode 98 4.39 0.2992
mode 99 4.41 0.3847
mode 100 4.43 0.2990
mode 101 4.47 0.4613
mode 102 4.49 0.3352
mode 103 4.49 0.4969
mode 104 4.53 0.4819
mode 105 4.53 0.2625
mode 106 4.55 0.3766

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.