CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  IMMUNE SYSTEM 14-NOV-18 6N2U  ***

Normal Mode Analysis for ID 2604131021151763097

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 2 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0426
mode 8 1.26 0.0592
mode 9 1.62 0.5248
mode 10 1.81 0.3653
mode 11 1.97 0.2592
mode 12 2.30 0.1528
mode 13 2.58 0.3703
mode 14 2.75 0.2878
mode 15 2.93 0.1129
mode 16 3.03 0.1520
mode 17 3.10 0.1958
mode 18 3.18 0.2970
mode 19 3.25 0.1301
mode 20 3.31 0.4356
mode 21 3.39 0.3251
mode 22 3.46 0.2209
mode 23 3.57 0.2279
mode 24 3.73 0.3562
mode 25 3.81 0.2560
mode 26 3.93 0.1990
mode 27 4.05 0.4086
mode 28 4.19 0.3657
mode 29 4.24 0.5033
mode 30 4.33 0.1798
mode 31 4.39 0.3962
mode 32 4.63 0.2667
mode 33 4.67 0.3850
mode 34 4.72 0.5503
mode 35 4.82 0.2042
mode 36 4.94 0.1919
mode 37 4.97 0.2162
mode 38 5.03 0.3173
mode 39 5.12 0.1560
mode 40 5.28 0.1733
mode 41 5.32 0.3647
mode 42 5.37 0.2467
mode 43 5.40 0.3897
mode 44 5.47 0.2108
mode 45 5.60 0.5168
mode 46 5.68 0.4303
mode 47 5.75 0.4293
mode 48 5.78 0.3534
mode 49 5.83 0.3745
mode 50 5.91 0.3559
mode 51 5.93 0.2252
mode 52 5.97 0.3875
mode 53 6.05 0.2335
mode 54 6.10 0.2544
mode 55 6.12 0.4509
mode 56 6.17 0.2145
mode 57 6.22 0.3205
mode 58 6.30 0.2529
mode 59 6.32 0.3132
mode 60 6.38 0.3804
mode 61 6.46 0.2098
mode 62 6.48 0.4012
mode 63 6.54 0.4630
mode 64 6.57 0.3772
mode 65 6.65 0.2547
mode 66 6.73 0.4148
mode 67 6.76 0.3506
mode 68 6.86 0.4879
mode 69 6.91 0.3511
mode 70 6.95 0.3396
mode 71 7.02 0.2692
mode 72 7.03 0.5041
mode 73 7.07 0.4897
mode 74 7.12 0.0811
mode 75 7.13 0.2348
mode 76 7.21 0.3762
mode 77 7.24 0.2880
mode 78 7.30 0.4747
mode 79 7.41 0.4663
mode 80 7.45 0.4074
mode 81 7.47 0.2978
mode 82 7.54 0.2366
mode 83 7.59 0.3178
mode 84 7.65 0.1666
mode 85 7.66 0.4091
mode 86 7.72 0.3904
mode 87 7.77 0.3473
mode 88 7.80 0.2133
mode 89 7.81 0.2457
mode 90 7.85 0.3150
mode 91 7.89 0.2883
mode 92 7.92 0.1564
mode 93 7.95 0.2979
mode 94 8.01 0.2050
mode 95 8.02 0.0771
mode 96 8.03 0.3674
mode 97 8.09 0.2832
mode 98 8.10 0.3454
mode 99 8.13 0.2316
mode 100 8.15 0.3450
mode 101 8.16 0.1385
mode 102 8.20 0.4234
mode 103 8.22 0.2247
mode 104 8.24 0.3719
mode 105 8.28 0.3202
mode 106 8.29 0.3549

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.