CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  APOPTOSIS 16-FEB-19 6O0K  ***

Normal Mode Analysis for ID 2604160511322307744

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 1 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0877
mode 8 1.11 0.4968
mode 9 1.14 0.2842
mode 10 1.35 0.2228
mode 11 1.45 0.2291
mode 12 1.48 0.0795
mode 13 1.51 0.3119
mode 14 1.72 0.0236
mode 15 1.77 0.2969
mode 16 1.82 0.4451
mode 17 1.84 0.3749
mode 18 1.92 0.3104
mode 19 1.98 0.2054
mode 20 2.00 0.1589
mode 21 2.03 0.3031
mode 22 2.09 0.4716
mode 23 2.16 0.3209
mode 24 2.20 0.5015
mode 25 2.23 0.1414
mode 26 2.27 0.4054
mode 27 2.29 0.3690
mode 28 2.34 0.4385
mode 29 2.36 0.4422
mode 30 2.42 0.2244
mode 31 2.45 0.2721
mode 32 2.48 0.3730
mode 33 2.52 0.3625
mode 34 2.55 0.0912
mode 35 2.57 0.2923
mode 36 2.58 0.2746
mode 37 2.64 0.4311
mode 38 2.67 0.2774
mode 39 2.70 0.3743
mode 40 2.78 0.4113
mode 41 2.83 0.3937
mode 42 2.88 0.3227
mode 43 2.91 0.3410
mode 44 2.94 0.5433
mode 45 2.98 0.3366
mode 46 3.04 0.2508
mode 47 3.04 0.4189
mode 48 3.07 0.5449
mode 49 3.09 0.3558
mode 50 3.10 0.4064
mode 51 3.16 0.3089
mode 52 3.19 0.3924
mode 53 3.23 0.3521
mode 54 3.24 0.2137
mode 55 3.26 0.3616
mode 56 3.27 0.3753
mode 57 3.30 0.3766
mode 58 3.30 0.4934
mode 59 3.33 0.5404
mode 60 3.40 0.2899
mode 61 3.42 0.3859
mode 62 3.44 0.3905
mode 63 3.47 0.0871
mode 64 3.48 0.4622
mode 65 3.50 0.3392
mode 66 3.54 0.2911
mode 67 3.55 0.5102
mode 68 3.58 0.4706
mode 69 3.62 0.3353
mode 70 3.65 0.3257
mode 71 3.68 0.4530
mode 72 3.71 0.2905
mode 73 3.71 0.4531
mode 74 3.75 0.2729
mode 75 3.80 0.1049
mode 76 3.81 0.3245
mode 77 3.84 0.2160
mode 78 3.86 0.2680
mode 79 3.89 0.3632
mode 80 3.93 0.1651
mode 81 3.95 0.3215
mode 82 3.97 0.4101
mode 83 3.99 0.3089
mode 84 4.00 0.3712
mode 85 4.00 0.3252
mode 86 4.03 0.4052
mode 87 4.06 0.3106
mode 88 4.07 0.3601
mode 89 4.10 0.2246
mode 90 4.12 0.4403
mode 91 4.14 0.3829
mode 92 4.16 0.4014
mode 93 4.19 0.4716
mode 94 4.21 0.3743
mode 95 4.24 0.3389
mode 96 4.26 0.3334
mode 97 4.27 0.2173
mode 98 4.31 0.3614
mode 99 4.33 0.3672
mode 100 4.33 0.2856
mode 101 4.34 0.2889
mode 102 4.35 0.3501
mode 103 4.38 0.3570
mode 104 4.39 0.3704
mode 105 4.40 0.3784
mode 106 4.42 0.3162

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.