CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  TRANSPORT PROTEIN 23-FEB-99 1NGL  ***

CA strain for 2604161210002404095

---  normal mode 10  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
MET 1GLN 2 -0.0174
GLN 2ASP 3 0.0170
ASP 3SER 4 0.0109
SER 4THR 5 -0.0872
THR 5SER 6 -0.0435
SER 6ASP 7 0.1550
ASP 7LEU 8 -0.0265
LEU 8ILE 9 0.0847
ILE 9PRO 10 -0.0340
PRO 10ALA 11 0.0824
ALA 11PRO 12 0.0330
PRO 12PRO 13 0.0065
PRO 13LEU 14 0.1045
LEU 14SER 15 -0.0015
SER 15LYS 16 -0.0172
LYS 16VAL 17 0.0005
VAL 17PRO 18 0.0038
PRO 18LEU 19 0.0169
LEU 19GLN 20 0.0219
GLN 20GLN 21 -0.0046
GLN 21ASN 22 0.0009
ASN 22PHE 23 0.0011
PHE 23GLN 24 0.0017
GLN 24ASP 25 0.0011
ASP 25ASN 26 0.0001
ASN 26GLN 27 -0.0073
GLN 27PHE 28 0.0005
PHE 28GLN 29 0.0046
GLN 29GLY 30 0.0007
GLY 30LYS 31 0.0108
LYS 31TRP 32 -0.0018
TRP 32TYR 33 0.0053
TYR 33VAL 34 0.0042
VAL 34VAL 35 -0.0153
VAL 35GLY 36 0.0028
GLY 36LEU 37 0.0045
LEU 37ALA 38 -0.0019
ALA 38GLY 39 0.0142
GLY 39ASN 40 0.0065
ASN 40ALA 41 0.0128
ALA 41ILE 42 -0.0026
ILE 42LEU 43 -0.0229
LEU 43ARG 44 0.0053
ARG 44GLU 45 -0.0034
GLU 45ASP 46 -0.0084
ASP 46LYS 47 0.0017
LYS 47ASP 48 0.0016
ASP 48PRO 49 0.0133
PRO 49GLN 50 0.0051
GLN 50LYS 51 -0.0096
LYS 51MET 52 0.0089
MET 52TYR 53 -0.0052
TYR 53ALA 54 0.0063
ALA 54THR 55 -0.0029
THR 55ILE 56 0.0013
ILE 56TYR 57 0.0095
TYR 57GLU 58 -0.0030
GLU 58LEU 59 0.0029
LEU 59LYS 60 -0.0032
LYS 60GLU 61 -0.0027
GLU 61ASP 62 0.0037
ASP 62LYS 63 0.0019
LYS 63SER 64 -0.0014
SER 64TYR 65 -0.0030
TYR 65ASN 66 0.0058
ASN 66VAL 67 -0.0018
VAL 67THR 68 0.0050
THR 68SER 69 0.0005
SER 69VAL 70 -0.0091
VAL 70LEU 71 0.0044
LEU 71PHE 72 -0.0045
PHE 72ARG 73 -0.0103
ARG 73LYS 74 -0.0031
LYS 74LYS 75 0.0035
LYS 75LYS 76 0.0103
LYS 76CYS 77 0.0177
CYS 77ASP 78 -0.0111
ASP 78TYR 79 0.0140
TYR 79TRP 80 -0.0063
TRP 80ILE 81 -0.0034
ILE 81ARG 82 -0.0037
ARG 82THR 83 0.0006
THR 83PHE 84 0.0032
PHE 84VAL 85 -0.0006
VAL 85PRO 86 -0.0011
PRO 86GLY 87 -0.0015
GLY 87CYS 88 -0.0015
CYS 88GLN 89 -0.0003
GLN 89PRO 90 0.0001
PRO 90GLY 91 0.0032
GLY 91GLU 92 -0.0018
GLU 92PHE 93 0.0035
PHE 93THR 94 0.0047
THR 94LEU 95 -0.0017
LEU 95GLY 96 0.0036
GLY 96ASN 97 -0.0253
ASN 97ILE 98 0.0016
ILE 98LYS 99 0.0022
LYS 99SER 100 0.0108
SER 100TYR 101 -0.0049
TYR 101PRO 102 -0.0050
PRO 102GLY 103 0.0012
GLY 103LEU 104 -0.0059
LEU 104THR 105 -0.0057
THR 105SER 106 0.0100
SER 106TYR 107 -0.0087
TYR 107LEU 108 0.0081
LEU 108VAL 109 0.0031
VAL 109ARG 110 0.0056
ARG 110VAL 111 0.0038
VAL 111VAL 112 0.0182
VAL 112SER 113 0.0039
SER 113THR 114 0.0146
THR 114ASN 115 0.0092
ASN 115TYR 116 0.0002
TYR 116ASN 117 -0.0031
ASN 117GLN 118 -0.0062
GLN 118HIS 119 0.0023
HIS 119ALA 120 0.0105
ALA 120MET 121 0.0006
MET 121VAL 122 -0.0032
VAL 122PHE 123 0.0163
PHE 123PHE 124 0.0062
PHE 124LYS 125 0.0051
LYS 125LYS 126 0.0056
LYS 126VAL 127 0.0008
VAL 127SER 128 0.0007
SER 128GLN 129 0.0000
GLN 129ASN 130 -0.0009
ASN 130ARG 131 0.0025
ARG 131GLU 132 0.0195
GLU 132TYR 133 -0.0065
TYR 133PHE 134 0.0060
PHE 134LYS 135 0.0049
LYS 135ILE 136 0.0033
ILE 136THR 137 0.0115
THR 137LEU 138 0.0038
LEU 138TYR 139 -0.0065
TYR 139GLY 140 0.0042
GLY 140ARG 141 -0.0081
ARG 141THR 142 -0.0078
THR 142LYS 143 0.0197
LYS 143GLU 144 -0.0183
GLU 144LEU 145 -0.0130
LEU 145THR 146 -0.0192
THR 146SER 147 0.0101
SER 147GLU 148 -0.0063
GLU 148LEU 149 0.0142
LEU 149LYS 150 -0.0167
LYS 150GLU 151 -0.0144
GLU 151ASN 152 0.0116
ASN 152PHE 153 0.0252
PHE 153ILE 154 -0.0408
ILE 154ARG 155 0.0194
ARG 155PHE 156 0.0176
PHE 156SER 157 0.0076
SER 157LYS 158 -0.0088
LYS 158SER 159 0.0472
SER 159LEU 160 -0.0017
LEU 160GLY 161 -0.0090
GLY 161LEU 162 -0.0184
LEU 162PRO 163 0.0005
PRO 163GLU 164 0.0069
GLU 164ASN 165 -0.0001
ASN 165HIS 166 -0.0017
HIS 166ILE 167 0.0058
ILE 167VAL 168 0.0090
VAL 168PHE 169 -0.0068
PHE 169PRO 170 -0.0020
PRO 170VAL 171 0.0044
VAL 171PRO 172 -0.0074
PRO 172ILE 173 0.0007
ILE 173ASP 174 -0.0245
ASP 174GLN 175 0.0127
GLN 175CYS 176 -0.0113
CYS 176ILE 177 -0.0045
ILE 177ASP 178 0.0049
ASP 178GLY 179 0.0036

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.