CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  TRANSPORT PROTEIN 23-FEB-99 1NGL  ***

CA strain for 2604161210002404095

---  normal mode 11  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
MET 1GLN 2 -0.0148
GLN 2ASP 3 0.0033
ASP 3SER 4 -0.0800
SER 4THR 5 0.0041
THR 5SER 6 0.1962
SER 6ASP 7 -0.1225
ASP 7LEU 8 0.0206
LEU 8ILE 9 0.0023
ILE 9PRO 10 -0.0140
PRO 10ALA 11 0.0146
ALA 11PRO 12 -0.0129
PRO 12PRO 13 0.0506
PRO 13LEU 14 0.1041
LEU 14SER 15 -0.0688
SER 15LYS 16 -0.0030
LYS 16VAL 17 -0.0150
VAL 17PRO 18 0.0055
PRO 18LEU 19 0.1038
LEU 19GLN 20 0.0562
GLN 20GLN 21 -0.0006
GLN 21ASN 22 0.0131
ASN 22PHE 23 -0.0349
PHE 23GLN 24 0.0335
GLN 24ASP 25 0.0159
ASP 25ASN 26 -0.0170
ASN 26GLN 27 0.0019
GLN 27PHE 28 0.0100
PHE 28GLN 29 0.0225
GLN 29GLY 30 -0.0271
GLY 30LYS 31 -0.0381
LYS 31TRP 32 -0.0036
TRP 32TYR 33 -0.0238
TYR 33VAL 34 -0.0128
VAL 34VAL 35 -0.0057
VAL 35GLY 36 -0.0005
GLY 36LEU 37 0.0106
LEU 37ALA 38 -0.0277
ALA 38GLY 39 0.0111
GLY 39ASN 40 -0.0121
ASN 40ALA 41 -0.0189
ALA 41ILE 42 0.0731
ILE 42LEU 43 0.0372
LEU 43ARG 44 0.0326
ARG 44GLU 45 -0.0004
GLU 45ASP 46 0.0303
ASP 46LYS 47 -0.0124
LYS 47ASP 48 -0.0014
ASP 48PRO 49 0.0147
PRO 49GLN 50 0.0240
GLN 50LYS 51 -0.0333
LYS 51MET 52 0.0013
MET 52TYR 53 -0.0389
TYR 53ALA 54 -0.0240
ALA 54THR 55 0.0193
THR 55ILE 56 -0.0321
ILE 56TYR 57 -0.0083
TYR 57GLU 58 -0.0091
GLU 58LEU 59 -0.0124
LEU 59LYS 60 0.0049
LYS 60GLU 61 -0.0140
GLU 61ASP 62 0.0122
ASP 62LYS 63 0.0108
LYS 63SER 64 0.0015
SER 64TYR 65 -0.0008
TYR 65ASN 66 0.0146
ASN 66VAL 67 -0.0107
VAL 67THR 68 0.0114
THR 68SER 69 -0.0147
SER 69VAL 70 0.0571
VAL 70LEU 71 0.0052
LEU 71PHE 72 0.0320
PHE 72ARG 73 -0.0168
ARG 73LYS 74 0.0269
LYS 74LYS 75 -0.0143
LYS 75LYS 76 0.0061
LYS 76CYS 77 0.0094
CYS 77ASP 78 0.0251
ASP 78TYR 79 0.0350
TYR 79TRP 80 0.0270
TRP 80ILE 81 0.0423
ILE 81ARG 82 0.0279
ARG 82THR 83 0.0014
THR 83PHE 84 0.0066
PHE 84VAL 85 0.0029
VAL 85PRO 86 0.0086
PRO 86GLY 87 -0.0034
GLY 87CYS 88 -0.0151
CYS 88GLN 89 -0.0030
GLN 89PRO 90 -0.0214
PRO 90GLY 91 0.0259
GLY 91GLU 92 -0.0404
GLU 92PHE 93 0.0124
PHE 93THR 94 -0.0557
THR 94LEU 95 0.0142
LEU 95GLY 96 -0.0083
GLY 96ASN 97 0.0622
ASN 97ILE 98 0.0230
ILE 98LYS 99 0.0140
LYS 99SER 100 -0.0151
SER 100TYR 101 0.0207
TYR 101PRO 102 0.0070
PRO 102GLY 103 -0.0214
GLY 103LEU 104 0.0201
LEU 104THR 105 0.0360
THR 105SER 106 -0.0882
SER 106TYR 107 -0.0055
TYR 107LEU 108 -0.0574
LEU 108VAL 109 -0.0299
VAL 109ARG 110 -0.0011
ARG 110VAL 111 -0.0402
VAL 111VAL 112 0.0451
VAL 112SER 113 -0.0246
SER 113THR 114 0.0558
THR 114ASN 115 -0.0317
ASN 115TYR 116 0.0136
TYR 116ASN 117 -0.0079
ASN 117GLN 118 0.0004
GLN 118HIS 119 0.0036
HIS 119ALA 120 -0.0206
ALA 120MET 121 0.0072
MET 121VAL 122 0.0071
VAL 122PHE 123 -0.0380
PHE 123PHE 124 -0.0044
PHE 124LYS 125 -0.0267
LYS 125LYS 126 -0.0118
LYS 126VAL 127 -0.0296
VAL 127SER 128 -0.0186
SER 128GLN 129 0.0211
GLN 129ASN 130 0.0111
ASN 130ARG 131 0.0316
ARG 131GLU 132 -0.0863
GLU 132TYR 133 0.0327
TYR 133PHE 134 -0.0022
PHE 134LYS 135 0.0149
LYS 135ILE 136 0.0229
ILE 136THR 137 -0.0200
THR 137LEU 138 0.0068
LEU 138TYR 139 -0.0041
TYR 139GLY 140 0.0013
GLY 140ARG 141 -0.0130
ARG 141THR 142 0.0035
THR 142LYS 143 -0.0280
LYS 143GLU 144 0.0226
GLU 144LEU 145 0.0125
LEU 145THR 146 0.0233
THR 146SER 147 -0.0222
SER 147GLU 148 0.0086
GLU 148LEU 149 -0.0156
LEU 149LYS 150 0.0110
LYS 150GLU 151 -0.0063
GLU 151ASN 152 -0.0020
ASN 152PHE 153 -0.0163
PHE 153ILE 154 0.0155
ILE 154ARG 155 0.0083
ARG 155PHE 156 -0.0345
PHE 156SER 157 -0.0008
SER 157LYS 158 0.0164
LYS 158SER 159 -0.0274
SER 159LEU 160 -0.0066
LEU 160GLY 161 -0.0089
GLY 161LEU 162 0.0091
LEU 162PRO 163 0.0216
PRO 163GLU 164 0.0259
GLU 164ASN 165 -0.1379
ASN 165HIS 166 -0.0520
HIS 166ILE 167 0.0339
ILE 167VAL 168 -0.0492
VAL 168PHE 169 -0.0149
PHE 169PRO 170 -0.0126
PRO 170VAL 171 -0.0076
VAL 171PRO 172 0.0119
PRO 172ILE 173 0.0133
ILE 173ASP 174 -0.0138
ASP 174GLN 175 -0.0088
GLN 175CYS 176 0.0182
CYS 176ILE 177 0.0031
ILE 177ASP 178 -0.0021
ASP 178GLY 179 -0.0025

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.