CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  TRANSPORT PROTEIN 23-FEB-99 1NGL  ***

CA strain for 2604161210002404095

---  normal mode 9  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
MET 1GLN 2 0.0016
GLN 2ASP 3 -0.0134
ASP 3SER 4 -0.0488
SER 4THR 5 -0.0161
THR 5SER 6 -0.1939
SER 6ASP 7 -0.0500
ASP 7LEU 8 -0.0461
LEU 8ILE 9 0.1042
ILE 9PRO 10 -0.0413
PRO 10ALA 11 0.0474
ALA 11PRO 12 0.0103
PRO 12PRO 13 0.0056
PRO 13LEU 14 0.0426
LEU 14SER 15 -0.0069
SER 15LYS 16 -0.0065
LYS 16VAL 17 -0.0019
VAL 17PRO 18 0.0016
PRO 18LEU 19 0.0104
LEU 19GLN 20 0.0095
GLN 20GLN 21 -0.0013
GLN 21ASN 22 0.0011
ASN 22PHE 23 -0.0019
PHE 23GLN 24 0.0024
GLN 24ASP 25 0.0010
ASP 25ASN 26 -0.0007
ASN 26GLN 27 -0.0010
GLN 27PHE 28 0.0008
PHE 28GLN 29 0.0020
GLN 29GLY 30 -0.0008
GLY 30LYS 31 -0.0002
LYS 31TRP 32 -0.0004
TRP 32TYR 33 -0.0005
TYR 33VAL 34 -0.0011
VAL 34VAL 35 -0.0033
VAL 35GLY 36 -0.0003
GLY 36LEU 37 0.0013
LEU 37ALA 38 -0.0026
ALA 38GLY 39 0.0042
GLY 39ASN 40 0.0005
ASN 40ALA 41 -0.0002
ALA 41ILE 42 0.0021
ILE 42LEU 43 0.0013
LEU 43ARG 44 0.0013
ARG 44GLU 45 -0.0008
GLU 45ASP 46 0.0027
ASP 46LYS 47 -0.0012
LYS 47ASP 48 0.0012
ASP 48PRO 49 0.0021
PRO 49GLN 50 0.0038
GLN 50LYS 51 -0.0041
LYS 51MET 52 0.0024
MET 52TYR 53 -0.0036
TYR 53ALA 54 -0.0003
ALA 54THR 55 0.0004
THR 55ILE 56 -0.0021
ILE 56TYR 57 0.0017
TYR 57GLU 58 -0.0013
GLU 58LEU 59 -0.0001
LEU 59LYS 60 0.0000
LYS 60GLU 61 -0.0012
GLU 61ASP 62 0.0014
ASP 62LYS 63 0.0011
LYS 63SER 64 -0.0007
SER 64TYR 65 -0.0006
TYR 65ASN 66 0.0021
ASN 66VAL 67 -0.0010
VAL 67THR 68 0.0015
THR 68SER 69 -0.0012
SER 69VAL 70 0.0015
VAL 70LEU 71 0.0011
LEU 71PHE 72 0.0009
PHE 72ARG 73 -0.0024
ARG 73LYS 74 0.0012
LYS 74LYS 75 -0.0001
LYS 75LYS 76 0.0021
LYS 76CYS 77 0.0036
CYS 77ASP 78 -0.0007
ASP 78TYR 79 0.0039
TYR 79TRP 80 -0.0004
TRP 80ILE 81 0.0018
ILE 81ARG 82 0.0005
ARG 82THR 83 0.0002
THR 83PHE 84 0.0012
PHE 84VAL 85 -0.0003
VAL 85PRO 86 0.0006
PRO 86GLY 87 -0.0007
GLY 87CYS 88 -0.0010
CYS 88GLN 89 -0.0001
GLN 89PRO 90 -0.0013
PRO 90GLY 91 0.0020
GLY 91GLU 92 -0.0019
GLU 92PHE 93 0.0015
PHE 93THR 94 -0.0007
THR 94LEU 95 0.0007
LEU 95GLY 96 0.0002
GLY 96ASN 97 -0.0012
ASN 97ILE 98 0.0005
ILE 98LYS 99 0.0002
LYS 99SER 100 0.0009
SER 100TYR 101 -0.0004
TYR 101PRO 102 -0.0001
PRO 102GLY 103 -0.0009
GLY 103LEU 104 0.0002
LEU 104THR 105 0.0006
THR 105SER 106 -0.0008
SER 106TYR 107 -0.0010
TYR 107LEU 108 0.0001
LEU 108VAL 109 -0.0001
VAL 109ARG 110 0.0020
ARG 110VAL 111 -0.0009
VAL 111VAL 112 0.0083
VAL 112SER 113 -0.0002
SER 113THR 114 0.0074
THR 114ASN 115 0.0002
ASN 115TYR 116 0.0008
TYR 116ASN 117 -0.0003
ASN 117GLN 118 -0.0012
GLN 118HIS 119 0.0007
HIS 119ALA 120 0.0008
ALA 120MET 121 0.0011
MET 121VAL 122 0.0004
VAL 122PHE 123 0.0026
PHE 123PHE 124 0.0034
PHE 124LYS 125 0.0001
LYS 125LYS 126 0.0011
LYS 126VAL 127 -0.0002
VAL 127SER 128 -0.0004
SER 128GLN 129 0.0002
GLN 129ASN 130 0.0003
ASN 130ARG 131 0.0007
ARG 131GLU 132 -0.0015
GLU 132TYR 133 0.0006
TYR 133PHE 134 0.0006
PHE 134LYS 135 0.0021
LYS 135ILE 136 0.0027
ILE 136THR 137 0.0026
THR 137LEU 138 0.0010
LEU 138TYR 139 -0.0013
TYR 139GLY 140 0.0006
GLY 140ARG 141 -0.0026
ARG 141THR 142 -0.0006
THR 142LYS 143 0.0028
LYS 143GLU 144 -0.0014
GLU 144LEU 145 -0.0012
LEU 145THR 146 -0.0018
THR 146SER 147 0.0001
SER 147GLU 148 -0.0009
GLU 148LEU 149 0.0018
LEU 149LYS 150 -0.0021
LYS 150GLU 151 -0.0027
GLU 151ASN 152 0.0017
ASN 152PHE 153 0.0035
PHE 153ILE 154 -0.0073
ILE 154ARG 155 0.0028
ARG 155PHE 156 0.0012
PHE 156SER 157 0.0011
SER 157LYS 158 -0.0022
LYS 158SER 159 0.0024
SER 159LEU 160 -0.0026
LEU 160GLY 161 -0.0006
GLY 161LEU 162 -0.0095
LEU 162PRO 163 0.0054
PRO 163GLU 164 0.0140
GLU 164ASN 165 -0.0066
ASN 165HIS 166 -0.0038
HIS 166ILE 167 0.0047
ILE 167VAL 168 0.0012
VAL 168PHE 169 -0.0031
PHE 169PRO 170 -0.0020
PRO 170VAL 171 -0.0004
VAL 171PRO 172 -0.0006
PRO 172ILE 173 0.0003
ILE 173ASP 174 -0.0039
ASP 174GLN 175 0.0017
GLN 175CYS 176 -0.0009
CYS 176ILE 177 -0.0011
ILE 177ASP 178 0.0008
ASP 178GLY 179 0.0011

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.