CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  TRANSFERASE 03-MAR-16 5IKP  ***

Normal Mode Analysis for ID 2604162227122643408

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 1 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.5497
mode 8 1.01 0.1123
mode 9 1.14 0.0496
mode 10 1.31 0.4796
mode 11 1.43 0.3818
mode 12 1.53 0.0011
mode 13 1.59 0.3300
mode 14 1.71 0.3947
mode 15 1.79 0.0328
mode 16 2.01 0.1502
mode 17 2.15 0.5726
mode 18 2.28 0.7088
mode 19 2.39 0.2493
mode 20 2.44 0.4545
mode 21 2.57 0.0046
mode 22 2.64 0.1845
mode 23 2.70 0.1037
mode 24 2.77 0.4249
mode 25 2.80 0.2989
mode 26 2.90 0.1018
mode 27 2.92 0.4175
mode 28 3.03 0.1380
mode 29 3.11 0.2538
mode 30 3.14 0.1266
mode 31 3.22 0.1891
mode 32 3.27 0.4304
mode 33 3.33 0.3795
mode 34 3.37 0.3798
mode 35 3.42 0.3182
mode 36 3.56 0.2472
mode 37 3.66 0.5644
mode 38 3.68 0.1857
mode 39 3.79 0.4678
mode 40 3.84 0.5072
mode 41 3.86 0.1825
mode 42 3.90 0.3209
mode 43 3.95 0.4414
mode 44 3.97 0.1408
mode 45 4.03 0.1363
mode 46 4.05 0.1089
mode 47 4.12 0.4017
mode 48 4.15 0.2471
mode 49 4.17 0.3455
mode 50 4.28 0.4965
mode 51 4.30 0.4014
mode 52 4.36 0.3076
mode 53 4.39 0.1894
mode 54 4.45 0.2869
mode 55 4.53 0.2301
mode 56 4.57 0.1535
mode 57 4.59 0.3931
mode 58 4.62 0.4114
mode 59 4.67 0.4352
mode 60 4.71 0.3838
mode 61 4.76 0.2875
mode 62 4.79 0.4189
mode 63 4.82 0.4414
mode 64 4.85 0.3960
mode 65 4.96 0.4498
mode 66 5.00 0.3702
mode 67 5.05 0.4421
mode 68 5.10 0.4764
mode 69 5.11 0.3178
mode 70 5.13 0.2906
mode 71 5.15 0.3645
mode 72 5.18 0.4540
mode 73 5.24 0.4112
mode 74 5.28 0.3659
mode 75 5.30 0.4117
mode 76 5.32 0.4156
mode 77 5.37 0.3732
mode 78 5.38 0.5047
mode 79 5.42 0.4264
mode 80 5.46 0.3167
mode 81 5.50 0.2924
mode 82 5.59 0.2983
mode 83 5.60 0.4131
mode 84 5.64 0.4081
mode 85 5.66 0.4009
mode 86 5.70 0.2309
mode 87 5.72 0.2900
mode 88 5.82 0.4729
mode 89 5.83 0.4493
mode 90 5.84 0.5279
mode 91 5.87 0.3288
mode 92 5.89 0.1984
mode 93 5.92 0.3692
mode 94 5.96 0.4579
mode 95 6.01 0.4654
mode 96 6.05 0.4810
mode 97 6.07 0.4016
mode 98 6.15 0.1943
mode 99 6.17 0.2962
mode 100 6.23 0.4782
mode 101 6.25 0.4301
mode 102 6.27 0.4093
mode 103 6.31 0.5620
mode 104 6.32 0.3069
mode 105 6.35 0.4662
mode 106 6.36 0.4165

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.