CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  TRANSCRIPTION 01-DEC-01 1KHX  ***

Normal Mode Analysis for ID 2604171708293065687

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 4 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0552
mode 8 1.60 0.0730
mode 9 2.54 0.0270
mode 10 4.40 0.0699
mode 11 5.07 0.2000
mode 12 5.33 0.0368
mode 13 7.37 0.3429
mode 14 8.15 0.3243
mode 15 9.40 0.0941
mode 16 9.46 0.2319
mode 17 10.94 0.1741
mode 18 13.07 0.3050
mode 19 13.32 0.3983
mode 20 13.48 0.1763
mode 21 13.91 0.1591
mode 22 15.07 0.4102
mode 23 15.87 0.4226
mode 24 16.57 0.2121
mode 25 16.63 0.2584
mode 26 17.03 0.2000
mode 27 17.59 0.4056
mode 28 18.33 0.2193
mode 29 19.02 0.3191
mode 30 19.21 0.4166
mode 31 19.79 0.1781
mode 32 19.93 0.3996
mode 33 20.19 0.2236
mode 34 21.00 0.3101
mode 35 21.30 0.3417
mode 36 21.78 0.3477
mode 37 21.94 0.4177
mode 38 22.04 0.5867
mode 39 22.54 0.3296
mode 40 22.88 0.2581
mode 41 23.35 0.1233
mode 42 23.46 0.1844
mode 43 24.06 0.6646
mode 44 24.28 0.2798
mode 45 24.92 0.3975
mode 46 25.24 0.3719
mode 47 25.38 0.3534
mode 48 25.54 0.2583
mode 49 26.17 0.5878
mode 50 26.68 0.3448
mode 51 26.87 0.0335
mode 52 26.98 0.3848
mode 53 27.35 0.3155
mode 54 27.49 0.2557
mode 55 27.96 0.3851
mode 56 28.36 0.6522
mode 57 28.46 0.4504
mode 58 28.68 0.1791
mode 59 29.08 0.4367
mode 60 29.33 0.5196
mode 61 29.41 0.4737
mode 62 29.81 0.4064
mode 63 30.00 0.1466
mode 64 30.48 0.3134
mode 65 30.67 0.3813
mode 66 31.09 0.3353
mode 67 31.22 0.3884
mode 68 31.61 0.3892
mode 69 31.81 0.4334
mode 70 32.15 0.4168
mode 71 32.21 0.2960
mode 72 32.74 0.4676
mode 73 32.94 0.3712
mode 74 33.19 0.3106
mode 75 33.40 0.4768
mode 76 33.76 0.3503
mode 77 33.89 0.3336
mode 78 34.25 0.3542
mode 79 34.57 0.4020
mode 80 34.96 0.1678
mode 81 35.01 0.4291
mode 82 35.23 0.6019
mode 83 35.43 0.0339
mode 84 35.68 0.4165
mode 85 35.86 0.3308
mode 86 35.98 0.3460
mode 87 36.22 0.4182
mode 88 36.53 0.3706
mode 89 36.61 0.4290
mode 90 36.70 0.4167
mode 91 36.99 0.4015
mode 92 37.18 0.4671
mode 93 37.47 0.3735
mode 94 37.51 0.5180
mode 95 37.66 0.3234
mode 96 37.73 0.2670
mode 97 38.10 0.4787
mode 98 38.32 0.3370
mode 99 38.59 0.4531
mode 100 38.85 0.4323
mode 101 39.18 0.4135
mode 102 39.24 0.5168
mode 103 39.54 0.5527
mode 104 39.61 0.3128
mode 105 39.75 0.3441
mode 106 40.14 0.2941

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.